PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10017647m
Common NameCARUB_v10017647mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GATA
Protein Properties Length: 324aa    MW: 35753.7 Da    PI: 6.711
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10017647mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.43.9e-18232265134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      C +C +tkTp+WR gp g+ktLCnaCG++y++ +
  Carubv10017647m 232 CMHCEVTKTPQWRLGPMGPKTLCNACGVRYKSGR 265
                      99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.2E-931322IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.728226262IPR000679Zinc finger, GATA-type
SMARTSM004012.0E-16226276IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.4E-14230263IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.05E-14230289No hitNo description
CDDcd002026.70E-15231278No hitNo description
PROSITE patternPS003440232257IPR000679Zinc finger, GATA-type
PfamPF003204.2E-16232265IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009845Biological Processseed germination
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MIGQSFPEDL DCGNFFDNMD DIMDFPGGDI DVGFGIGDSD AFPTIWTTQH DTWPAASDPL  60
FSSNTNSNSS TELYVPFEDI VKVDRPQSFV EESLVEKKEE SFSTNTDSSS SHSQFRSSSP  120
VSVLESSSSS SQTTNTTSLV LPGKHGRPRT KRPRPPVQEK DRAKDNVCGA DSRLIIRIPK  180
QFLSDHNKMI NKKKKKKAKV TSSSSSSGID LEVNGNNVDS YSSEQQHPVR KCMHCEVTKT  240
PQWRLGPMGP KTLCNACGVR YKSGRLFPEY RPAASPTFTP ALHSNSHKKV AEMRSKRCSD  300
GSYITEENDL QELIPNNAFI GVD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150154KRPRP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10017647m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4121070.0AF412107.1 Arabidopsis thaliana AT3g54810/F28P10_210 mRNA, complete cds.
GenBankAK3175030.0AK317503.1 Arabidopsis thaliana AT3G54810 mRNA, complete cds, clone: RAFL23-14-K23.
GenBankAY0780290.0AY078029.1 Arabidopsis thaliana AT3g54810/F28P10_210 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291493.10.0GATA transcription factor 8
SwissprotQ9SV300.0GATA8_ARATH; GATA transcription factor 8
TrEMBLR0FQH60.0R0FQH6_9BRAS; GATA transcription factor
STRINGXP_006291493.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49752751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.21e-127GATA family protein
Publications ? help Back to Top
  1. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]