PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10017646m | ||||||||
Common Name | CARUB_v10017646mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | Trihelix | ||||||||
Protein Properties | Length: 324aa MW: 36289.8 Da PI: 9.9327 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 44.3 | 4.8e-14 | 26 | 125 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.............rergferspkqCkekwenlnkrykkikegekkrtses.sstcp 80 +W+++ + +Li+a ++ +l+rg+l++++W+ev++++ ++ + r+ +qCk++++ l+k+yk +k++ ++ +++s s +p Carubv10017646m 26 CWSEEATFTLIQAWGNRFVELSRGNLRQKHWQEVANAVndrhfnsgrnvsaAKSQPYRTDVQCKNRIDTLKKKYKVEKARVSESNPGSyISPWP 119 7************************************************997777789********************99998764442689** PP trihelix 81 yfdqle 86 +f+ l+ Carubv10017646m 120 FFSALD 125 **9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.7E-24 | 24 | 127 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MMDSAHDSFS PGSSRPSPST LSREDCWSEE ATFTLIQAWG NRFVELSRGN LRQKHWQEVA 60 NAVNDRHFNS GRNVSAAKSQ PYRTDVQCKN RIDTLKKKYK VEKARVSESN PGSYISPWPF 120 FSALDDLLRE SFPTSSTPDS TDNNHPNQRL SLPMAIIPVP VAPRSAIPRR PATSPAIIPH 180 VGDDLLGFRG NLNAFAAAAA AAACPASEDD SEGSRSRSSG RSGSNKKRER EIEKKQGYKE 240 VADAIERLGQ IYERVEERKR KEMVELEKQR MRFAKELECH RMQLFTEMQV RLHKIRRTSG 300 PKGPTSSASA ALQYGMMDFP SYL* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00413 | DAP | Transfer from AT3G58630 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10017646m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK118084 | 0.0 | AK118084.1 Arabidopsis thaliana At3g58630 mRNA for unknown protein, complete cds, clone: RAFL19-33-K15. | |||
GenBank | BT005520 | 0.0 | BT005520.1 Arabidopsis thaliana clone U50694 unknown protein (At3g58630) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006291499.1 | 0.0 | trihelix transcription factor ASIL2 isoform X2 | ||||
Refseq | XP_023638761.1 | 0.0 | trihelix transcription factor ASIL2 isoform X2 | ||||
Refseq | XP_023638762.1 | 0.0 | trihelix transcription factor ASIL2 isoform X2 | ||||
TrEMBL | R0FPF3 | 0.0 | R0FPF3_9BRAS; Uncharacterized protein | ||||
STRING | XP_006291499.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9635 | 23 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58630.1 | 1e-161 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | Carubv10017646m |
Entrez Gene | 17886150 |