PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10017644m | ||||||||
Common Name | CARUB_v10017644mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | ZF-HD | ||||||||
Protein Properties | Length: 324aa MW: 34273.7 Da PI: 7.9507 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 110.8 | 7e-35 | 47 | 104 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 +v+YkeClkNhAa++Ggha+DGCgEfmps++++ +++++lkCaACgCHRnFHRr++++ Carubv10017644m 47 TVTYKECLKNHAAAIGGHALDGCGEFMPSPSSTpSDPTSLKCAACGCHRNFHRRDPDD 104 799*****************************99********************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 5.8E-29 | 48 | 102 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-16 | 48 | 100 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.0E-31 | 49 | 101 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.717 | 50 | 101 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.69E-18 | 186 | 257 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.3E-29 | 191 | 257 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.1E-26 | 197 | 254 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MLEVRAMDHM TPKSPEPESE TPIRIQPAKP ISFSNGFIKR HHHHNVTVTY KECLKNHAAA 60 IGGHALDGCG EFMPSPSSTP SDPTSLKCAA CGCHRNFHRR DPDDSSAALP PSSLPLSSTT 120 TAAIEYQPHH RHHPLPPPLP RSPNSSSPPP ISSSYMLLAL SGNNNNKTVP FSDLNFSAAA 180 AAAGRHNNNI STTPGSRKRF RTKFSSSQKE KMHEFADKIG WKIQKRDEDN VREFCREIGV 240 DKGVLKVWMH NNKNTFKFPG GGGGAATTGI NGGEDDGVRG GSGLANDEDD GGGDGGDGGG 300 GRFESDSGGA DGRGNVNASS SSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 8e-21 | 196 | 255 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00387 | DAP | Transfer from AT3G28920 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10017644m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK117188 | 1e-152 | AK117188.1 Arabidopsis thaliana mRNA, clone: RAFL16-72-M15. | |||
GenBank | AP002049 | 1e-152 | AP002049.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MYI13. | |||
GenBank | AY093171 | 1e-152 | AY093171.1 Arabidopsis thaliana unknown protein (At3g28920) mRNA, complete cds. | |||
GenBank | AY128820 | 1e-152 | AY128820.1 Arabidopsis thaliana unknown protein (At3g28920) mRNA, complete cds. | |||
GenBank | CP002686 | 1e-152 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006291497.1 | 0.0 | zinc-finger homeodomain protein 9 | ||||
Swissprot | Q9LHF0 | 1e-133 | ZHD9_ARATH; Zinc-finger homeodomain protein 9 | ||||
TrEMBL | R0HGU0 | 0.0 | R0HGU0_9BRAS; Uncharacterized protein | ||||
STRING | XP_006291497.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2220 | 25 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28920.1 | 8e-82 | homeobox protein 34 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10017644m |
Entrez Gene | 17886788 |
Publications ? help Back to Top | |||
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