PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10017643m

Common Name

CARUB_v10017642mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

Dof

Protein Properties

Length: 325aa MW: 35866.7 Da PI: 9.6959

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10017643m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.1	9.5e-39	72	132	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGg++rknk+ss Carubv10017643m 72 PQEKVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKNKRSS 132 6899******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-30	71	130	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.5E-33	74	130	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.705	76	130	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	78	114	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009639	Biological Process	response to red or far red light
GO:0009845	Biological Process	seed germination
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MDATKWTQGF QEMINVKPMD QMISNVTNNN TSQQQPTFIA TNIRPNATAS NGGSGGNNNS 60 TATTMETRKA RPQEKVNCPR CNSTNTKFCY YNNYSLTQPR YFCKGCRRYW TEGGSLRNVP 120 VGGSSRKNKR SSTPLASASN PKLPDLNPPI LFSSQIPNKS KDLNLLSFPV MQDHHHGMSH 180 FLHMPKIENN NTSSSIYASS SPVSALELLR SNGVSSRGMN TFLPGQMMDS NSVLYSSLGF 240 PTMPDFKQSN NNLSFSIDHH QGIGHNNINS NQRAQDNNDD MNGASRVLFP FPDMKELSTT 300 TQEKSNGNNT YWSGMFSNTG GSSW*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10017643m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ224122	0.0	AJ224122.3 Arabidopsis thaliana DAG1 gene.
GenBank	AL138642	0.0	AL138642.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F21F14.
GenBank	CP002686	0.0	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023638081.1	0.0	dof zinc finger protein DOF3.7 isoform X1
Swissprot	Q43385	0.0	DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBL	R0H533	0.0	R0H533_9BRAS; Uncharacterized protein
STRING	XP_006291495.1	0.0	(Capsella rubella)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	0.0	Dof family protein

Link Out ? help Back to Top
Phytozome	Carubv10017643m
Entrez Gene	17886952