PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10017553m | ||||||||
Common Name | CARUB_v10017538mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | G2-like | ||||||||
Protein Properties | Length: 351aa MW: 38673.4 Da PI: 9.0497 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 103.9 | 9.8e-33 | 99 | 152 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+ave LGG+++AtPk +l++m+vkgLt++hvkSHLQ+YR Carubv10017553m 99 PRLRWTPDLHRCFVNAVEILGGQHRATPKLVLKMMDVKGLTISHVKSHLQMYRG 152 8****************************************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.139 | 95 | 155 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.8E-30 | 95 | 152 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.67E-14 | 99 | 151 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.8E-23 | 99 | 152 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.5E-8 | 100 | 151 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
THTPLNSSLL FCLLFSFSSP FRVLLLLRFL FLLRKNQNFL LGSKEKSKLF KFRGSVKMGR 60 CGGGRNGNGN GNGNFTGVGF NGNGGGGGGV RPYVRSPVPR LRWTPDLHRC FVNAVEILGG 120 QHRATPKLVL KMMDVKGLTI SHVKSHLQMY RGSKLTLGKP VEESSSSSSI RRRGRRRQDS 180 GEEDYHLHDN LSLLSSSRND CLLGFHSFPP LSSHSPLLLR GGGGGRSKEL QQTSAESGGY 240 DDDDDFLHII NMNTTIHTTT FPSHHLPSSK KTEEWREQEQ EQEEEEEDLS LSLSLNHHHH 300 HWRSNGSSLS ETSEAAVSTC SAPFVSKDCF ASSSKIDDLN LNLSISLLGS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-18 | 100 | 154 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-18 | 100 | 154 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-18 | 100 | 154 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-18 | 100 | 154 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10017553m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006291399.2 | 0.0 | putative Myb family transcription factor At1g14600 isoform X1 | ||||
Swissprot | Q700D9 | 6e-65 | MYBF_ARATH; Putative Myb family transcription factor At1g14600 | ||||
TrEMBL | R0FP51 | 0.0 | R0FP51_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_006291400.1 | 1e-159 | (Capsella rubella) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02060.1 | 2e-53 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10017553m |
Entrez Gene | 17884714 |