PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10017538m
Common NameCARUB_v10017538mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family G2-like
Protein Properties Length: 353aa    MW: 38889.6 Da    PI: 8.8252
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10017538mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.99.9e-3399152255
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      prlrWtp+LH++Fv+ave LGG+++AtPk +l++m+vkgLt++hvkSHLQ+YR 
  Carubv10017538m  99 PRLRWTPDLHRCFVNAVEILGGQHRATPKLVLKMMDVKGLTISHVKSHLQMYRG 152
                      8****************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.13995155IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.8E-3095152IPR009057Homeodomain-like
SuperFamilySSF466891.67E-1499151IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-2399152IPR006447Myb domain, plants
PfamPF002491.5E-8100151IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
THTPLNSSLL FCLLFSFSSP FRVLLLLRFL FLLRKNQNFL LGSKEKSKLF KFRGSVKMGR  60
CGGGRNGNGN GNGNFTGVGF NGNGGGGGGV RPYVRSPVPR LRWTPDLHRC FVNAVEILGG  120
QHRATPKLVL KMMDVKGLTI SHVKSHLQMY RGSKLTLGKP DTVEESSSSS SIRRRGRRRQ  180
DSGEEDYHLH DNLSLLSSSR NDCLLGFHSF PPLSSHSPLL LRGGGGGRSK ELQQTSAESG  240
GYDDDDDFLH IINMNTTIHT TTFPSHHLPS SKKTEEWREQ EQEQEEEEED LSLSLSLNHH  300
HHHWRSNGSS LSETSEAAVS TCSAPFVSKD CFASSSKIDD LNLNLSISLL GS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-18100154357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-18100154357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-18100154357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-18100154357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10017538m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2295116e-88AK229511.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL17-14-B12.
GenBankBT0085566e-88BT008556.1 Arabidopsis thaliana clone U50358 unknown protein (At2g02060) mRNA, complete cds.
GenBankBT0086996e-88BT008699.1 Arabidopsis thaliana clone RAFL17-14-B12 (R50358) unknown protein (At2g02060) mRNA, complete cds.
GenBankKJ1389246e-88KJ138924.1 Arabidopsis thaliana glycosyltransferase (AT2G02060) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291399.21e-131putative Myb family transcription factor At1g14600 isoform X1
SwissprotQ700D91e-64MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBLR0HK960.0R0HK96_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006291400.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46941852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.14e-53G2-like family protein