PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10017445m
Common NameCARUB_v10017445mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GATA
Protein Properties Length: 377aa    MW: 41423.3 Da    PI: 6.7097
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10017445mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.11.2e-18289322134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      C +Cg+ kTp+WR gp+g ktLCnaCG++y++ +
  Carubv10017445m 289 CNHCGVQKTPQWRAGPSGAKTLCNACGVRYKSGR 322
                      *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577169.5E-14281345No hitNo description
SMARTSM004011.6E-14283337IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.136283319IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.3E-14287320IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.74E-14288336No hitNo description
PfamPF003202.0E-16289322IPR000679Zinc finger, GATA-type
PROSITE patternPS003440289314IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MVFCAFEASS LAVADTIIFN ALPNSPPLLN SHFTIPSSSS SSLPFTDLSL LRLHSLCLLS  60
GKMESVELAL KNSNMNEKTL TTGGALNGED FSVDDLLDFP NEDDDDDVAR VDEDETDFKA  120
QRKRGPSLEI TLHRSNDFST ADNFPTSELS VPMDDIAELE WLSNFVEDSF TPYSSAPTKK  180
PVWLTGNRRH PVPSVNEDSC FKAPPPPPVQ IRPKRARAGV RVWSSPSSSS SSATSSSSSS  240
GPSSPLWLSS VSELLDEPMV NKKQKKTKKN VWKIAGQTQT QTQTQTRRCN HCGVQKTPQW  300
RAGPSGAKTL CNACGVRYKS GRLFPEYRPA CSPTFSSELH SNHHRKVIEM RRKKETSEEA  360
DEITGLNQTV QVVPSF*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00404DAPTransfer from AT3G51080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10017445m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023637874.10.0GATA transcription factor 6
RefseqXP_023637875.10.0GATA transcription factor 6
SwissprotQ9SD381e-131GATA6_ARATH; GATA transcription factor 6
TrEMBLR0HGE90.0R0HGE9_9BRAS; GATA transcription factor
STRINGXP_006291312.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36982561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51080.11e-110GATA transcription factor 6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]