PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10017428m | ||||||||
Common Name | CARUB_v10017428mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | C2H2 | ||||||||
Protein Properties | Length: 383aa MW: 43054.7 Da PI: 6.6962 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16 | 3.4e-05 | 216 | 235 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ Carubv10017428m 216 FSCPVCFKTFNRYNNMQMHM 235 89*****************9 PP | |||||||
2 | zf-C2H2 | 14.4 | 0.00011 | 300 | 322 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ Carubv10017428m 300 FMCRKCGKAFAVRGDWRTHEKNC 322 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 5.6E-6 | 216 | 235 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.64 | 216 | 243 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.38 | 216 | 238 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 218 | 238 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.88E-6 | 282 | 320 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.1E-5 | 296 | 320 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 49 | 300 | 320 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.808 | 300 | 320 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009860 | Biological Process | pollen tube growth | ||||
GO:0010500 | Biological Process | transmitting tissue development | ||||
GO:1990058 | Biological Process | fruit replum development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MTDPYSNFFT DWFKSNPFHH YPSSSSNPSP SNLPPPSLPT PSSFFFFPQS GDLRRPPPLP 60 TPPPSPPLRE ALPLLSLSPA NKQQDHHHSH DHQNQEPPST SMDVDYDHQD DHNLDDDDHD 120 VTVALHIGLP SPSAQEMASL LMMSSSSSSS RTTLHHDDLN HKKDLDHDYS HGAAEGGEDD 180 DEDLVGGDGG CRISRLNKGQ YWIPTPSQIL IGPTQFSCPV CFKTFNRYNN MQMHMWGHGS 240 QYRKGPESLR GTQPTGMLRL PCYCCAPGCR NNIDHPRAKP LKDFRTLQTH YKRKHGIKPF 300 MCRKCGKAFA VRGDWRTHEK NCGKLWYCIC GSDFKHKRSL KDHIKAFGNG HGAYGIDGFD 360 EEDEPASEVE QLDNDHESMQ SK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10017428m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF254447 | 0.0 | AF254447.1 Arabidopsis thaliana WIP2 protein (WIP2) mRNA, complete cds. | |||
GenBank | BT021089 | 0.0 | BT021089.1 Arabidopsis thaliana At3g57670 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006291292.1 | 0.0 | zinc finger protein WIP2 | ||||
Swissprot | Q9SVY1 | 0.0 | ZWIP2_ARATH; Zinc finger protein WIP2 | ||||
TrEMBL | R0HGD5 | 0.0 | R0HGD5_9BRAS; Uncharacterized protein | ||||
STRING | XP_006291292.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM239 | 28 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57670.1 | 1e-162 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10017428m |
Entrez Gene | 17885733 |
Publications ? help Back to Top | |||
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