PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10017366m
Common NameCARUB_v10017366mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GRF
Protein Properties Length: 408aa    MW: 45524 Da    PI: 7.3996
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10017366mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC802.3e-25171215145
              WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                      d+epgrC+RtDGKkWRCsr+v++g+k+C+rH+hrgr+rsrk++e+
  Carubv10017366m 171 DPEPGRCKRTDGKKWRCSRDVVAGHKYCDRHIHRGRNRSRKPVET 215
                      79****************************************986 PP
2QLQ53.66.5e-19102136337
              QLQ   3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                      F++aQ+q+L+ Q+l+y+y++a++ vP+eLl++i+k
  Carubv10017366m 102 FSWAQWQELELQALIYRYMLAGASVPQELLLPIKK 136
                      *********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009518.6E-12100136IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.412101136IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.0E-13102134IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.479171215IPR014977WRC domain
PfamPF088791.9E-21172214IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
KQPTHFSVSL SLSLFHSLSL CSMDLQLKQW RSQQQSESEE QGSATKISNF FFDQIQSQTT  60
ATSAAAPLPL FVPEPTSSSS FSCFSPDSSS SSSRFLKVGN FFSWAQWQEL ELQALIYRYM  120
LAGASVPQEL LLPIKKSLIH QSSSMHFLHH PLQHSFPHQQ PSWYWGRGAM DPEPGRCKRT  180
DGKKWRCSRD VVAGHKYCDR HIHRGRNRSR KPVETATTTT TTTATTAPSS FVLGEELGHG  240
PNNNNFFPSG SSQHLHLSHQ QSCSSEMKQE SNNSSNNHKR PYEAHNGFSN GRSDDGHILR  300
PFFDDWPRSS DSTSSPMRSS TCHLSISMPG NGNTSSDVSL KLSTGNEEEE EEENMRNNNN  360
NEREQLNWWS NGGNHHNMGG PLAEALRSAS STPSVLHQMG ISTQVFH*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10017366m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1026370.0AY102637.1 Arabidopsis thaliana transcription activator (GRF4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291235.20.0growth-regulating factor 4
SwissprotQ8L8A70.0GRF4_ARATH; Growth-regulating factor 4
TrEMBLR0HJT50.0R0HJT5_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006291235.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19262667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.11e-164growth-regulating factor 4
Publications ? help Back to Top
  1. Kuijt SJ, et al.
    Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors.
    Plant Physiol., 2014. 164(4): p. 1952-66
    [PMID:24532604]
  2. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]