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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Carubv10017361m |
| Common Name | CARUB_v10017361mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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| Family |
GRAS |
| Protein Properties |
Length: 409aa MW: 46237 Da PI: 6.019 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Carubv10017361m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 343.5 | 3.6e-105 | 27 | 405 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95
++lLl+cA+a++s+d++la+++L+ l+++a pdgd++qRl++ f++AL +r +++ ++l++a++ + +++ + ++ l +f++++P+++f++
Carubv10017361m 27 EQLLLHCATAIDSNDAALAHQILWVLNNTAPPDGDSTQRLTSAFLRALLSRAVSKNPTLSSAISFLPPADELHRFSVVELAAFVDLTPWHRFGF 120
79*****************************************************************997666666666677************ PP
GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl...v 182
++aN aIl aveg ++vHi+D+++++++Q p+L++a+a R ++pp l++T+v+s++++ + ++ee+g++L +fA++ ++++ef+++ +
Carubv10017361m 121 IAANAAILTAVEGYSTVHIVDLSLTHCMQIPTLIDAMARRLnKPPPLLKLTVVSSSDHFppfINISYEELGSKLVNFATTRNITMEFTIIpstY 214
****************************************966777*********99889999**************************98866 PP
GRAS 183 akrledleleeLrvkp..gEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
++ +++l +++Lr+ p +Eal+Vn++++l ++++e+++++s r+ +Lk+++sl+P++v+++e+++d++se++++r+ +a++y++ fd+++
Carubv10017361m 215 SDGFSSL-IQQLRIYPsfNEALVVNCHMMLRYIPEETLTSSSssLRTVFLKQLRSLNPRIVTLIEEDVDLTSENLVNRLRSAFNYFWIPFDTTD 307
7778888.****************************9998887799************************************************ PP
GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdr 365
+ + se+r+++E+e ++++i+nvva+eg+er+er+et+++W er+++a F+ v+++e+a++++k++l++++ ++g++ e++++slvl+Wk++
Carubv10017361m 308 TFM---SEQRRWYEAE-ISWKIENVVAKEGEERVERTETKRRWIERMRDAEFGGVRVNEEAVADVKAMLEEHAvGWGMKKEDDDNSLVLTWKGH 397
**7...9*********.***************************************************************************** PP
GRAS 366 pLvsvSaW 373
++v++++W
Carubv10017361m 398 SVVFATVW 405
******** PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 409 aa
Download sequence Send
to blast |
MTKTRLLNPT RLSSLKPLRG CDANFMEQLL LHCATAIDSN DAALAHQILW VLNNTAPPDG 60
DSTQRLTSAF LRALLSRAVS KNPTLSSAIS FLPPADELHR FSVVELAAFV DLTPWHRFGF 120
IAANAAILTA VEGYSTVHIV DLSLTHCMQI PTLIDAMARR LNKPPPLLKL TVVSSSDHFP 180
PFINISYEEL GSKLVNFATT RNITMEFTII PSTYSDGFSS LIQQLRIYPS FNEALVVNCH 240
MMLRYIPEET LTSSSSSLRT VFLKQLRSLN PRIVTLIEED VDLTSENLVN RLRSAFNYFW 300
IPFDTTDTFM SEQRRWYEAE ISWKIENVVA KEGEERVERT ETKRRWIERM RDAEFGGVRV 360
NEEAVADVKA MLEEHAVGWG MKKEDDDNSL VLTWKGHSVV FATVWVPI*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK226623 | 0.0 | AK226623.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-29-K13. |
| GenBank | AL132978 | 0.0 | AL132978.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F3A4. |
| GenBank | BT012553 | 0.0 | BT012553.1 Arabidopsis thaliana At3g49950 gene, complete cds. |
| GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
