PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10017308m | ||||||||
Common Name | CARUB_v10017308mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | G2-like | ||||||||
Protein Properties | Length: 430aa MW: 47720.4 Da PI: 7.0188 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.5 | 5.3e-32 | 230 | 285 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Carubv10017308m 230 KARRCWSPDLHRRFVQALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 285 68****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.682 | 227 | 287 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.54E-17 | 228 | 288 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-28 | 228 | 288 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.1E-26 | 230 | 285 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.6E-7 | 232 | 283 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009266 | Biological Process | response to temperature stimulus | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010452 | Biological Process | histone H3-K36 methylation | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:1903507 | Biological Process | negative regulation of nucleic acid-templated transcription | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 430 aa Download sequence Send to blast |
MASSSELSLD CKPQSYSMLL KSFGDNFQSD QTTQKLEDLL SRLEQERLKI DAFKRELPLC 60 MQLLNNAVEV YKQQLEAYRP NSNNNNQGVP TRPVLEEFIP LRNQPEKSNN KGSNWMTTAQ 120 LWSQSETKPK NIDSTDQSLP KDEIASSPKL GHFDSKQRNG SGAFLPFSKE QSLPELALST 180 EVIKRVSPTR EHTNGQDGND ESMINNDNNN NNNHSNSNGV SSTTSQSNRK ARRCWSPDLH 240 RRFVQALQML GGSQVATPKQ IRELMKVDGL TNDEVKSHLQ KYRLHTRRPS PSPQTSGGPG 300 PHLVVLGGIW VPPEYTTAHG GTPTLYHHQV HHHHTSSAGQ PPPHFCSSQE FYTTPPHPQQ 360 LHHHHFQTFN SSSGGAASTD STHHQLTDTA ADEAKSSESG GGERKGLAAL REEDEDQSNV 420 NGSEITLKF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-14 | 230 | 283 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-14 | 230 | 283 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 3e-14 | 230 | 283 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-14 | 230 | 283 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-14 | 230 | 283 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-14 | 230 | 283 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-14 | 230 | 283 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-14 | 230 | 283 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-14 | 230 | 283 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-14 | 230 | 283 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-14 | 230 | 283 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-14 | 230 | 283 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00261 | DAP | Transfer from AT2G03500 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10017308m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK221662 | 0.0 | AK221662.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL09-70-E23. | |||
GenBank | AY060559 | 0.0 | AY060559.1 Arabidopsis thaliana At2g03500/T4M8.7 mRNA, complete cds. | |||
GenBank | AY133630 | 0.0 | AY133630.1 Arabidopsis thaliana At2g03500/T4M8.7 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006291183.1 | 0.0 | myb family transcription factor EFM | ||||
Swissprot | Q9ZQ85 | 0.0 | EFM_ARATH; Myb family transcription factor EFM | ||||
TrEMBL | R0FPQ8 | 0.0 | R0FPQ8_9BRAS; Uncharacterized protein | ||||
STRING | XP_006291183.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7134 | 28 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 0.0 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10017308m |
Entrez Gene | 17885175 |
Publications ? help Back to Top | |||
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