PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10017261m
Common NameCARUB_v10017261mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C3H
Protein Properties Length: 442aa    MW: 48841.8 Da    PI: 5.6099
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10017261mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH421.5e-13117140326
                      S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                       e C+f++rtG Ck+G++CkF+H+
  Carubv10017261m 117 AEDCSFYMRTGSCKFGSSCKFNHP 140
                      689********************9 PP
2zf-CCCH31.92.2e-10167187525
                      --SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                       C++++rtG CkyG++C+F+H
  Carubv10017261m 167 DCKYYFRTGGCKYGESCRFNH 187
                      5******************** PP
3zf-CCCH406.7e-13211234326
                      S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      +++C++++r+G Ck+G+ CkF+H+
  Carubv10017261m 211 EVECPYYMRNGSCKFGAECKFNHP 234
                      789********************9 PP
4zf-CCCH17.57.6e-06341366227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+++ +tG Ck+  +Ck++H++
  Carubv10017261m 341 DQPECSYYIKTGDCKFKFNCKYHHPK 366
                      689*********************96 PP
5zf-CCCH331.1e-10388411326
                      S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      + +C +++r+G+Ck+G+ C+F H+
  Carubv10017261m 388 QNICTHYSRYGICKFGPACRFDHS 411
                      679********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.432114142IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-7114141IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-6114142IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-11117140IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-5120139IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.629162190IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-4162189IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5165190IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-8167187IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-6168189IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.887208236IPR000571Zinc finger, CCCH-type
SMARTSM003568.9E-7208235IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-10211234IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5211235IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4214233IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.718339367IPR000571Zinc finger, CCCH-type
SMARTSM003561339366IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-5343369IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-6383411IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.502385413IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-4385412IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-8388411IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4390412IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MVNSEEMEDG FDPKPVSRPS SGDSSAGRSL SDLNHAAEED LSDRFKNVGL KEVRKEQSET  60
MMSVSEGNGG LDSNAVVTNQ EQEEDGDGYG CVYGDGDGWS ENESEENEAV YPVRPGAEDC  120
SFYMRTGSCK FGSSCKFNHP LSRKIQIARD NKVREKEEDG DKLRLIDCKY YFRTGGCKYG  180
ESCRFNHTKS KSCLASVPEL NFLGLPIRLG EVECPYYMRN GSCKFGAECK FNHPDPTTIG  240
GTDSPSFHSN NGVSAGSFSP KSTFQASSAS WSSPRHANGS TPFIPVMLSQ THGVPSQTPE  300
WNGYQASVYS SERGVFSSSN ISMLSQYHHQ MPAEEFPERP DQPECSYYIK TGDCKFKFNC  360
KYHHPKNRLP KLPPYALNDK GLPLRPDQNI CTHYSRYGIC KFGPACRFDH SAQLPYPTGN  420
SQTIVEPSQV GANGDETDGW N*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10017261m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0331390.0BT033139.1 Arabidopsis thaliana unknown protein (At3g48440) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291144.10.0zinc finger CCCH domain-containing protein 43 isoform X2
SwissprotQ9STM40.0C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLR0FNK50.0R0FNK5_9BRAS; Uncharacterized protein
STRINGXP_006291144.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41762758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.10.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]