PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10016909m
Common NameCARUB_v10016909mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GRAS
Protein Properties Length: 590aa    MW: 67138 Da    PI: 5.0053
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10016909mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS394.79.8e-1212155851374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      +++lL++cA+av+s d+ +a + L++++e++s +gd++qRl  +++eAL+arl+++   ++  + + + s +++++ l+a+k f++++P+l+++
  Carubv10016909m 215 MRDLLMQCAQAVASFDQFRAFEKLKEIREHSSIRGDATQRLGYHLAEALEARLTGT---MSTPI-SATYSITSMVDILKAYKGFVQACPTLRMC 304
                      5799***************************************************3...33222.3333335589******************* PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                      ++taN++I e + +++++HiiDf+i +G+QWp+L++aL++R++gpp lR+Tg++ p+sg   +e+++etg+rL++f+++++vpfe++  +ak++
  Carubv10016909m 305 YFTANRTIFELAPKATTLHIIDFGILYGFQWPCLIKALSNREDGPPLLRVTGIELPQSGfrPSERVQETGKRLKRFCDKFKVPFEYSY-IAKKW 397
                      **********************************************************9*****************************.7**** PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                      ed++l+eL +++gE+++Vn++l+l++++de+ +l+s+rd+vLkl+++++P+++v++e +  +ns+ Fl+rf eal ++salfd++e++lp+e++
  Carubv10016909m 398 EDITLDELVINTGETTVVNCILRLQYTPDETITLNSPRDTVLKLFRDINPNLFVFAEINGTYNSPFFLTRFREALFHCSALFDMYETTLPEEDD 491
                      ********************************************************************************************** PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                       r+ vErel+ r++++vvaceg+er++r et+++W+ r+ +aGFkp++l++ ++k+ k l+++ + + + +++++++l++gWk++ L++vS+W+
  Carubv10016909m 492 CRTHVERELIVRDAMSVVACEGSERFARPETYKQWQVRILRAGFKPAKLNKLIVKEGKELVKQRYHKDFVIDNDNHWLLQGWKGKILYAVSCWK 585
                      *****************************************************************888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.433189565IPR005202Transcription factor GRAS
PfamPF035143.4E-118215585IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MDAVLQVQVD GFRFENGSGS CCKPRNNNLE SGTTNSFICF NESDESQSSN SSPTESTACS  60
DYLPVFKYIN DMLMEEDLEG QPCMLVDSLA LQAAEKSFYE VLQDPSPPTS SDQIFGDLDQ  120
PNLDFVGFPE VTSDESMRRY RHRDDDDEDD DDLEGGRKTK LPAISTADEL AEKYEEVLLI  180
CQKNTQGEAS PNKTGRAKSS SNRSKQQKSD QPVDMRDLLM QCAQAVASFD QFRAFEKLKE  240
IREHSSIRGD ATQRLGYHLA EALEARLTGT MSTPISATYS ITSMVDILKA YKGFVQACPT  300
LRMCYFTANR TIFELAPKAT TLHIIDFGIL YGFQWPCLIK ALSNREDGPP LLRVTGIELP  360
QSGFRPSERV QETGKRLKRF CDKFKVPFEY SYIAKKWEDI TLDELVINTG ETTVVNCILR  420
LQYTPDETIT LNSPRDTVLK LFRDINPNLF VFAEINGTYN SPFFLTRFRE ALFHCSALFD  480
MYETTLPEED DCRTHVEREL IVRDAMSVVA CEGSERFARP ETYKQWQVRI LRAGFKPAKL  540
NKLIVKEGKE LVKQRYHKDF VIDNDNHWLL QGWKGKILYA VSCWKPAKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-422055869380Protein SCARECROW
5b3h_A1e-422055868379Protein SCARECROW
5b3h_D1e-422055868379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10016909m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006290802.10.0scarecrow-like protein 30 isoform X1
SwissprotQ9SNB80.0SCL30_ARATH; Scarecrow-like protein 30
TrEMBLR0HF420.0R0HF42_9BRAS; Uncharacterized protein
STRINGXP_006290802.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36462561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46600.10.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]