PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10016704m
Common NameCARUB_v10016704mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HD-ZIP
Protein Properties Length: 804aa    MW: 87878.3 Da    PI: 6.6239
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10016704mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.27.6e-20124179156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++ +++t++q++ Le++F+++ +p++++r +L+++l+L+ rqVk+WFqNrR+++k
  Carubv10016704m 124 KKRYHRHTPKQIQDLESVFKECAHPDEKQRLDLSRRLNLDPRQVKFWFQNRRTQMK 179
                      688999***********************************************999 PP

2START185.62.6e-583225412206
                      HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                      la++a++elvk+a+ +ep+Wv+ss    + +n++e+ ++f++  +     + +ea+++ g v+ ++  lve+l+d+  +W e+++    + +t+
  Carubv10016704m 322 LALAAMDELVKMAQTREPLWVRSSdtgfDVLNQEEYDTSFSRCVGpkpdgFVSEASKEAGTVIINSLALVETLMDSE-RWAEMFPsmisRTSTT 414
                      6899************************66677777666655333677889**************************.*******9999***** PP

                      EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
            START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwveh 169
                      e issg      gal+lm+aelq+lsplvp R + f+R+++q+ +g+w++vdvS+ds ++ + sss+ R   lpSg+l+++++ng+skvtw+eh
  Carubv10016704m 415 EIISSGmggsrnGALHLMQAELQLLSPLVPvRQVSFLRFCKQHAEGVWAVVDVSIDSIREGS-SSSCRR---LPSGCLVQDMANGYSKVTWIEH 504
                      *************************************************************9.777766...********************** PP

                      EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      ++++++ +h l+r+l++ gla+ga +w+a+lqrqce+
  Carubv10016704m 505 AEYDEKRIHRLYRPLLSCGLAFGAHRWMAALQRQCEC 541
                      ***********************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.1E-20112181IPR009057Homeodomain-like
SuperFamilySSF466892.63E-19112181IPR009057Homeodomain-like
PROSITE profilePS5007117.07121181IPR001356Homeobox domain
SMARTSM003891.9E-18122185IPR001356Homeobox domain
PfamPF000461.8E-17124179IPR001356Homeobox domain
CDDcd000861.26E-17124181No hitNo description
PROSITE patternPS000270156179IPR017970Homeobox, conserved site
PROSITE profilePS5084840.212312544IPR002913START domain
SuperFamilySSF559617.0E-31316541No hitNo description
CDDcd088752.33E-112316540No hitNo description
SMARTSM002341.7E-46321541IPR002913START domain
PfamPF018521.0E-50322541IPR002913START domain
SuperFamilySSF559611.51E-18570795No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 804 aa     Download sequence    Send to blast
MNFNGFLDDH SSGVDGAGAS KLLSDVPYNN HFSFSAVDTM LGTTAIIPSQ HSLTPHSRPF  60
SSSPGLSLGL QTNGEMSRNG EVLEPNVSRK TSRGEDVESR SESDNAEALS GDDLDTSDRP  120
FKKKKRYHRH TPKQIQDLES VFKECAHPDE KQRLDLSRRL NLDPRQVKFW FQNRRTQMKT  180
QIERHENALL RQENDKLRAE NMSVREAMRN PMCGNCGGPA VIGDISMEEQ HLRIENSRLK  240
DELDRVCALT GKFLGRSNGS HYIPDSALVL GVGLGCNGGG GFTLSSPRFE ISNGTGSGLA  300
TVNHQPPVSV SDFDHRSRYL DLALAAMDEL VKMAQTREPL WVRSSDTGFD VLNQEEYDTS  360
FSRCVGPKPD GFVSEASKEA GTVIINSLAL VETLMDSERW AEMFPSMISR TSTTEIISSG  420
MGGSRNGALH LMQAELQLLS PLVPVRQVSF LRFCKQHAEG VWAVVDVSID SIREGSSSSC  480
RRLPSGCLVQ DMANGYSKVT WIEHAEYDEK RIHRLYRPLL SCGLAFGAHR WMAALQRQCE  540
CLTILMSSTV SPSPSPTPIN CNGRKSMLKL AKRMTDNFCG GVCASSLQKW SKLNVGNVDE  600
DVRIMTRKSV NNPGEPPGIV LNAATSVWMP VSPRRLFDFL GNERLRSEWD ILSNGGPMKE  660
MAHIAKGHDH SNSVSLLRAS AVNANQSSML ILQETSIDAA GAVVVYAPVD IPAMQAVMNG  720
GDSAYVALLP SGFAILPNAG TQREESNGGS WMEEGGSLLT VAFQILVNSL PTAKLTVESV  780
ETVNNLISCT VQKIKAALHC DST*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00418DAPTransfer from AT3G61150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10016704m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0508660.0AY050866.1 Arabidopsis thaliana putative homeobox protein (At3g61150) mRNA, complete cds.
GenBankAY0967570.0AY096757.1 Arabidopsis thaliana putative homeobox protein (At3g61150) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006290613.10.0homeobox-leucine zipper protein HDG1
SwissprotQ9M2E80.0HDG1_ARATH; Homeobox-leucine zipper protein HDG1
TrEMBLR0FNB90.0R0FNB9_9BRAS; Uncharacterized protein
STRINGXP_006290613.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]