PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10016704m | ||||||||
Common Name | CARUB_v10016704mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 804aa MW: 87878.3 Da PI: 6.6239 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.2 | 7.6e-20 | 124 | 179 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++ Le++F+++ +p++++r +L+++l+L+ rqVk+WFqNrR+++k Carubv10016704m 124 KKRYHRHTPKQIQDLESVFKECAHPDEKQRLDLSRRLNLDPRQVKFWFQNRRTQMK 179 688999***********************************************999 PP | |||||||
2 | START | 185.6 | 2.6e-58 | 322 | 541 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 la++a++elvk+a+ +ep+Wv+ss + +n++e+ ++f++ + + +ea+++ g v+ ++ lve+l+d+ +W e+++ + +t+ Carubv10016704m 322 LALAAMDELVKMAQTREPLWVRSSdtgfDVLNQEEYDTSFSRCVGpkpdgFVSEASKEAGTVIINSLALVETLMDSE-RWAEMFPsmisRTSTT 414 6899************************66677777666655333677889**************************.*******9999***** PP EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS START 83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwveh 169 e issg gal+lm+aelq+lsplvp R + f+R+++q+ +g+w++vdvS+ds ++ + sss+ R lpSg+l+++++ng+skvtw+eh Carubv10016704m 415 EIISSGmggsrnGALHLMQAELQLLSPLVPvRQVSFLRFCKQHAEGVWAVVDVSIDSIREGS-SSSCRR---LPSGCLVQDMANGYSKVTWIEH 504 *************************************************************9.777766...********************** PP EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 ++++++ +h l+r+l++ gla+ga +w+a+lqrqce+ Carubv10016704m 505 AEYDEKRIHRLYRPLLSCGLAFGAHRWMAALQRQCEC 541 ***********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.1E-20 | 112 | 181 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.63E-19 | 112 | 181 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.07 | 121 | 181 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.9E-18 | 122 | 185 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.8E-17 | 124 | 179 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.26E-17 | 124 | 181 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 156 | 179 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 40.212 | 312 | 544 | IPR002913 | START domain |
SuperFamily | SSF55961 | 7.0E-31 | 316 | 541 | No hit | No description |
CDD | cd08875 | 2.33E-112 | 316 | 540 | No hit | No description |
SMART | SM00234 | 1.7E-46 | 321 | 541 | IPR002913 | START domain |
Pfam | PF01852 | 1.0E-50 | 322 | 541 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.51E-18 | 570 | 795 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 804 aa Download sequence Send to blast |
MNFNGFLDDH SSGVDGAGAS KLLSDVPYNN HFSFSAVDTM LGTTAIIPSQ HSLTPHSRPF 60 SSSPGLSLGL QTNGEMSRNG EVLEPNVSRK TSRGEDVESR SESDNAEALS GDDLDTSDRP 120 FKKKKRYHRH TPKQIQDLES VFKECAHPDE KQRLDLSRRL NLDPRQVKFW FQNRRTQMKT 180 QIERHENALL RQENDKLRAE NMSVREAMRN PMCGNCGGPA VIGDISMEEQ HLRIENSRLK 240 DELDRVCALT GKFLGRSNGS HYIPDSALVL GVGLGCNGGG GFTLSSPRFE ISNGTGSGLA 300 TVNHQPPVSV SDFDHRSRYL DLALAAMDEL VKMAQTREPL WVRSSDTGFD VLNQEEYDTS 360 FSRCVGPKPD GFVSEASKEA GTVIINSLAL VETLMDSERW AEMFPSMISR TSTTEIISSG 420 MGGSRNGALH LMQAELQLLS PLVPVRQVSF LRFCKQHAEG VWAVVDVSID SIREGSSSSC 480 RRLPSGCLVQ DMANGYSKVT WIEHAEYDEK RIHRLYRPLL SCGLAFGAHR WMAALQRQCE 540 CLTILMSSTV SPSPSPTPIN CNGRKSMLKL AKRMTDNFCG GVCASSLQKW SKLNVGNVDE 600 DVRIMTRKSV NNPGEPPGIV LNAATSVWMP VSPRRLFDFL GNERLRSEWD ILSNGGPMKE 660 MAHIAKGHDH SNSVSLLRAS AVNANQSSML ILQETSIDAA GAVVVYAPVD IPAMQAVMNG 720 GDSAYVALLP SGFAILPNAG TQREESNGGS WMEEGGSLLT VAFQILVNSL PTAKLTVESV 780 ETVNNLISCT VQKIKAALHC DST* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00418 | DAP | Transfer from AT3G61150 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10016704m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY050866 | 0.0 | AY050866.1 Arabidopsis thaliana putative homeobox protein (At3g61150) mRNA, complete cds. | |||
GenBank | AY096757 | 0.0 | AY096757.1 Arabidopsis thaliana putative homeobox protein (At3g61150) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006290613.1 | 0.0 | homeobox-leucine zipper protein HDG1 | ||||
Swissprot | Q9M2E8 | 0.0 | HDG1_ARATH; Homeobox-leucine zipper protein HDG1 | ||||
TrEMBL | R0FNB9 | 0.0 | R0FNB9_9BRAS; Uncharacterized protein | ||||
STRING | XP_006290613.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1128 | 27 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61150.1 | 0.0 | homeodomain GLABROUS 1 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10016704m |
Entrez Gene | 17884746 |
Publications ? help Back to Top | |||
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