PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10016665m

Common Name

CARUB_v10016665mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

Nin-like

Protein Properties

Length: 905aa MW: 99928.2 Da PI: 4.9788

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10016665m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.6	2.9e-29	550	600	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rki+++ Carubv10016665m 550 EKNVSLNVLQQYFSGSLKDAAKSLGVCPTTLKRICRQHGIMRWPSRKINKV 600 89***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.336	534	620	IPR003035	RWP-RK domain
Pfam	PF02042	2.8E-27	552	600	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.58E-21	791	888	No hit	No description
Gene3D	G3DSA:3.10.20.240	8.0E-21	800	882	No hit	No description
SMART	SM00666	3.5E-20	802	885	IPR000270	PB1 domain
PROSITE profile	PS51745	17.806	802	885	IPR000270	PB1 domain
CDD	cd06407	2.34E-32	803	884	No hit	No description
Pfam	PF00564	1.6E-15	804	884	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 905 aa Download sequence Send to blast
MENPSASREK GFCFPDVPAE EMDGWVKNLI FEEDMFSSSS TSELMNFESF ASWCNTPSAA 60 TDFLFTQYDL STSQSTTPFG GFQGSYVGVK RPAQEMISQF HCLSDTEKLT GKRSKGSNQT 120 SSVDYSVPRS LSHTLDDKML KALSLFMEFS GEGILAQFWT PIKKGDHYML STCDQAYLLD 180 SRLSEYREVS RNFTFSAEAN QCSYPGLPGR VFISGIPEWT SNVMYYKTAE YLRMKHALDN 240 DVRGSIAIPI LEASGSSCCA VLELVTCREK PNFDVEMDSV CRALKAVNLQ TSTIPRSQYL 300 SSNQKEALAE IRDVLRAVCH AHRLPLALAW IPCSYSKRAN NELVKVYGKN SRDVSLLCIE 360 ETACYVNDME MEGYVNACLE HYLREGQGIV GKALISNKPS FSSDVKTFNI CEYPLVQHAR 420 KFGLNAAVAT KLRSTLTGEN DYILEFFLPV NMKGSSEQQL LLDSLSSTMQ RLCRTLRTVS 480 DAETSNLPQA ITVSEESLQT TYLDTDVNST ATIFSNMSSD TTNDIAGSQG NIQQEISGAR 540 RSEKKKSSTE KNVSLNVLQQ YFSGSLKDAA KSLGVCPTTL KRICRQHGIM RWPSRKINKV 600 NRSLRKIQTV LDSVQGVEGG LRFDSVTGEF VAVGPFIQEF DTQKSLSSHN DEDAFVISQS 660 DMDEDASLEP LKVTSGDGGR VKMEESVETI QAGGPGSLME PWAWISKDSG LNYTDDINIG 720 KRSEEVKKDK DLCVRRCLSS VALADDGTNT RIVEPNPSIS NSMSDSSNSS GAVVLGSSSA 780 SIEQNWNPIT HNTSGESGSS SILTVKATYR DDTVRFKLDP YLVGCSQLYG EVGKRFKLQE 840 GAFQLKYLDD EEEWVMLVTD SDLYECFEIL NGMRKHTVKF LVRDLPSTAI GSSAGSNGYL 900 GTCS*

Sequence ? help Back to Top

Protein Sequence Length: 905 aa Download sequence Send to blast

MENPSASREK GFCFPDVPAE EMDGWVKNLI FEEDMFSSSS TSELMNFESF ASWCNTPSAA  60
TDFLFTQYDL STSQSTTPFG GFQGSYVGVK RPAQEMISQF HCLSDTEKLT GKRSKGSNQT  120
SSVDYSVPRS LSHTLDDKML KALSLFMEFS GEGILAQFWT PIKKGDHYML STCDQAYLLD  180
SRLSEYREVS RNFTFSAEAN QCSYPGLPGR VFISGIPEWT SNVMYYKTAE YLRMKHALDN  240
DVRGSIAIPI LEASGSSCCA VLELVTCREK PNFDVEMDSV CRALKAVNLQ TSTIPRSQYL  300
SSNQKEALAE IRDVLRAVCH AHRLPLALAW IPCSYSKRAN NELVKVYGKN SRDVSLLCIE  360
ETACYVNDME MEGYVNACLE HYLREGQGIV GKALISNKPS FSSDVKTFNI CEYPLVQHAR  420
KFGLNAAVAT KLRSTLTGEN DYILEFFLPV NMKGSSEQQL LLDSLSSTMQ RLCRTLRTVS  480
DAETSNLPQA ITVSEESLQT TYLDTDVNST ATIFSNMSSD TTNDIAGSQG NIQQEISGAR  540
RSEKKKSSTE KNVSLNVLQQ YFSGSLKDAA KSLGVCPTTL KRICRQHGIM RWPSRKINKV  600
NRSLRKIQTV LDSVQGVEGG LRFDSVTGEF VAVGPFIQEF DTQKSLSSHN DEDAFVISQS  660
DMDEDASLEP LKVTSGDGGR VKMEESVETI QAGGPGSLME PWAWISKDSG LNYTDDINIG  720
KRSEEVKKDK DLCVRRCLSS VALADDGTNT RIVEPNPSIS NSMSDSSNSS GAVVLGSSSA  780
SIEQNWNPIT HNTSGESGSS SILTVKATYR DDTVRFKLDP YLVGCSQLYG EVGKRFKLQE  840
GAFQLKYLDD EEEWVMLVTD SDLYECFEIL NGMRKHTVKF LVRDLPSTAI GSSAGSNGYL  900
GTCS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	539	545	RRSEKKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10016665m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK220674	0.0	AK220674.1 Arabidopsis thaliana mRNA for putative protein, complete cds, clone: RAFL21-80-B11.
GenBank	BT010459	0.0	BT010459.1 Arabidopsis thaliana RWP-RK domain containing protein (At3g59580) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023638784.1	0.0	protein NLP9
Swissprot	Q9M1B0	0.0	NLP9_ARATH; Protein NLP9
TrEMBL	R0FN83	0.0	R0FN83_9BRAS; Uncharacterized protein
STRING	XP_006290578.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2299	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Carubv10016665m
Entrez Gene	17884961