PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10016442m
Common NameCARUB_v10016442mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family CO-like
Protein Properties Length: 390aa    MW: 42985.2 Da    PI: 5.9509
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10016442mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box217.1e-07648339
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                     e+kC+++   ++ ++C+++   +C +C ++ H+       Ht+
  Carubv10016442m  6 EPKCDHCATAQAVIYCKSDLAKVCLNCDVHVHSAnplshrHTR 48
                     799******99********************966888855655 PP
2CCT62.11.8e-21332375144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      R++a+lRYkeKr +R F K+irY+sRKa+A+sR+RvKGrFvk+ 
  Carubv10016442m 332 RNQAKLRYKEKRLKRSFGKQIRYASRKARADSRKRVKGRFVKAG 375
                      99***************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.9E-8451IPR000315B-box-type zinc finger
PfamPF006432.5E-5648IPR000315B-box-type zinc finger
CDDcd000211.87E-5751No hitNo description
PROSITE profilePS5101714.555332374IPR010402CCT domain
PfamPF062035.7E-16332374IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MSPSIEPKCD HCATAQAVIY CKSDLAKVCL NCDVHVHSAN PLSHRHTRSL ICQKCFSQPA  60
VIRCLDDKVS YCQGCHWHAS DCSVLGHTLQ SLNPFSGCPS PTDFNRMWSS ILEPSFSGLV  120
SPLVGSLPLN DPNNNTAFGM AKINELDGLI ASSYSLVSHN NISYTQSFSD QSSFFSDESK  180
GCPDFVLELE DDLCEELNLD NAPLNFDVGD DIIRFSSEEP DHMVPKCLFS DKDNTSVTAS  240
NFTIDKALET TSPGQQDCTN YLSGPFQMNI NTIGLPLPPS PVLFGQIHPT MSPTISNITG  300
ESSAADYRMS PGFIMSEAPW ESNLELPCPQ ARNQAKLRYK EKRLKRSFGK QIRYASRKAR  360
ADSRKRVKGR FVKAGDNYDY DPSSPPNNQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10016442m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0007391e-125AP000739.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MEK6.
GenBankCP0026861e-125CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006300206.10.0zinc finger protein CONSTANS-LIKE 12
SwissprotQ9LJ440.0COL12_ARATH; Zinc finger protein CONSTANS-LIKE 12
TrEMBLR0HTG40.0R0HTG4_9BRAS; Uncharacterized protein
STRINGXP_006300206.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53192240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21880.11e-168B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ordoñez-Herrera N, et al.
    The Transcription Factor COL12 Is a Substrate of the COP1/SPA E3 Ligase and Regulates Flowering Time and Plant Architecture.
    Plant Physiol., 2018. 176(2): p. 1327-1340
    [PMID:29187570]