PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10016432m
Common NameCARUB_v10016432mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 346aa    MW: 39388.5 Da    PI: 6.7481
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10016432mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.7e-05189208120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      ++Cp C k+F+r  n++ H+
  Carubv10016432m 189 FTCPLCFKTFNRYNNMQMHM 208
                      89*****************9 PP
2zf-C2H213.10.00028273295123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C  Cgk F  k + ++H +++
  Carubv10016432m 273 FACRRCGKAFAVKGDWRTHEKNC 295
                      78*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.5E-5189208IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.66189216IPR007087Zinc finger, C2H2
PROSITE patternPS000280191211IPR007087Zinc finger, C2H2
SuperFamilySSF576672.22E-6259293No hitNo description
Gene3DG3DSA:3.30.160.601.6E-5260293IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.767273293IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MSEPACVFNN GYVDYYDYSF NYSTSLSRIY DSHGNFYYPH HTTSPNINTN HNPTSPDSPP  60
LREALPLLSL SPIHKHQEPI AHHHEYYFME TTAETSSNSN FLDHELDHNE VTVDLHLGLP  120
NFGDGGSSSS DVVLDSTDDQ EHHDHQDQGV EFARASDHDD GHGGLQRGNH LHHFWIPTPS  180
QILMGPTQFT CPLCFKTFNR YNNMQMHMWG HGSQYRKGPE SLRGTQPTAM LKLPCYCCAP  240
GCKNNIDHPR ARPLKDFRTL QTHYKRKHGV RPFACRRCGK AFAVKGDWRT HEKNCGKLWY  300
CSCESDFKHK RSLKDHVKAF GNGHVPCCGI DHEEEDAASD VEHQE*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10016432m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3118110.0AJ311811.2 Arabidopsis thaliana mRNA for WIP4 protein (At3g20880 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006300196.10.0zinc finger protein WIP4
SwissprotQ8W0300.0ZWIP4_ARATH; Zinc finger protein WIP4
TrEMBLR0HTF90.0R0HTF9_9BRAS; Uncharacterized protein
STRINGXP_006300196.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20880.10.0WIP domain protein 4
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]