PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10016245m | ||||||||
Common Name | CARUB_v10016245mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MYB | ||||||||
Protein Properties | Length: 204aa MW: 23242.4 Da PI: 10.1903 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.3 | 5.4e-16 | 26 | 73 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd +l +++ +G g W+++a+ g++Rt+k+c++rw++yl Carubv10016245m 26 KGPWTMEEDFILFNYILNHGEGLWNSVAKASGLKRTGKSCRLRWLNYL 73 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 56.6 | 6.1e-18 | 79 | 122 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l+++++++lG++ W++Ia++++ gRt++++k++w++ Carubv10016245m 79 RGNITAEEQLLIIQLHAKLGNR-WSKIAKHLP-GRTDNEIKNFWRT 122 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.864 | 21 | 73 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.24E-29 | 24 | 120 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.4E-12 | 25 | 75 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-14 | 26 | 73 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-21 | 27 | 80 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.54E-8 | 28 | 73 | No hit | No description |
PROSITE profile | PS51294 | 24.749 | 74 | 128 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-16 | 78 | 126 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-16 | 79 | 122 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.0E-25 | 81 | 128 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.07E-12 | 83 | 122 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0080086 | Biological Process | stamen filament development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
METMKKKGRG KATITSQKEE EGTVRKGPWT MEEDFILFNY ILNHGEGLWN SVAKASGLKR 60 TGKSCRLRWL NYLRPDVRRG NITAEEQLLI IQLHAKLGNR WSKIAKHLPG RTDNEIKNFW 120 RTKIQRHMKV PPKNMMHQHC SGNSQSSGMT TTDQGSSGKA IDMAESFSPA TTTFNVVEQS 180 NENYWNVEDL WPVHLLNGDH HVI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-26 | 26 | 126 | 27 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting redundantly with MYB21 and MYB24 to control stamen filament elongation in the late developed flowers. Repressed at the transcript levels by DELLA proteins. {ECO:0000269|PubMed:19325888}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00324 | DAP | Transfer from AT3G01530 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10016245m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK118091 | 0.0 | AK118091.1 Arabidopsis thaliana At3g01530 mRNA for putative transcription factor, complete cds, clone: RAFL19-34-G03. | |||
GenBank | BT005574 | 0.0 | BT005574.1 Arabidopsis thaliana clone U50886 putative myb family transcription factor (At3g01530) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006300020.1 | 1e-152 | transcription factor MYB57 | ||||
Swissprot | Q9SSA1 | 1e-134 | MYB57_ARATH; Transcription factor MYB57 | ||||
TrEMBL | R0I8T7 | 1e-151 | R0I8T7_9BRAS; Uncharacterized protein | ||||
STRING | XP_006300020.1 | 1e-152 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01530.1 | 1e-136 | myb domain protein 57 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10016245m |
Entrez Gene | 17893408 |