PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10016240m | ||||||||
Common Name | CARUB_v10016240mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | bHLH | ||||||||
Protein Properties | Length: 566aa MW: 64291.6 Da PI: 4.7136 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.3 | 5.7e-13 | 316 | 361 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + ++ErrRR+++N+++ Lr+l+P +Kl+ a+iL A++Y+k+Lq Carubv10016240m 316 NLMAERRRRKKLNDRLYALRSLVPRI-----TKLDRASILGDAINYVKELQ 361 5589*********************7.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 3.1E-18 | 10 | 148 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.323 | 311 | 360 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.42E-14 | 313 | 363 | No hit | No description |
SuperFamily | SSF47459 | 2.09E-17 | 315 | 376 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-10 | 316 | 361 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.7E-16 | 317 | 366 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.4E-17 | 318 | 374 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0048657 | Biological Process | anther wall tapetum cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000978 | Molecular Function | RNA polymerase II core promoter proximal region sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 566 aa Download sequence Send to blast |
MESNMQNLLE KLRPLVGARA WDYCVLWRLN EDQRFVKWMG CCCGGTELIA ENGTEEFSFG 60 SCRDVMFHHP RTKSCEFLSH LPSSIPLDSG IYAETLLTNQ TGWLSESSEP SFMQETICTR 120 VLIPISGGLV ELFATRHVAE DQNVVDFVMG HCNMLMDETV TINMMVGDEV ESKPYGMLSG 180 EINQKGSKDE DMMNLPSSYD VSADQMRLNF LPQISDYEGQ QHLKVKSDYH HETLGYLQEN 240 GNKEMMGMNP FNTMAEDGIP VIGEPSLLVN EQQVANDKEM NENGRLDSGS DCSDQIDDED 300 DPKYKKKSGK ISQAKNLMAE RRRRKKLNDR LYALRSLVPR ITKLDRASIL GDAINYVKEL 360 QNEAKELQDE LEENSETEDG SNRQQGGMSL NGTVVTGFHP GLSCNSNIPN VKQDVDLDNS 420 NDKGQEMEPQ VDVAQLDGRE FFVKVICEYK PGGFTRLMEA LDSLGLEVTN ANTTRYLSLV 480 SNVFKVEKSD NEMVQAEHVR NSLLEITRNT SRGWQDDQMA TGSMQNEKND VDYQHYDDHQ 540 HHHHPFDHQM NHHHHQHINH YHNNQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 304 | 325 | KKKSGKISQAKNLMAERRRRKK |
2 | 319 | 326 | ERRRRKKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a crucial role in tapetum development. Required for male fertility and pollen differentiation, especially during the post-meiotic transcriptional regulation of microspore development within the developing anther (PubMed:12535353). Binds E-box regions in the AHL16/TEK promoter. {ECO:0000269|PubMed:12535353, ECO:0000269|PubMed:24804694}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10016240m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ511991 | 0.0 | AJ511991.1 Brassica napus mRNA for bHLH transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006300017.1 | 0.0 | transcription factor ABORTED MICROSPORES | ||||
Swissprot | Q9ZVX2 | 0.0 | AMS_ARATH; Transcription factor ABORTED MICROSPORES | ||||
TrEMBL | R0I4J3 | 0.0 | R0I4J3_9BRAS; Uncharacterized protein | ||||
STRING | XP_006300017.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7589 | 27 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16910.1 | 0.0 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10016240m |
Entrez Gene | 17890753 |