PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10016166m
Common NameCARUB_v10016166mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GeBP
Protein Properties Length: 282aa    MW: 31929.4 Da    PI: 10.0834
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10016166mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573102.24.4e-3291181298
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 
                      + qrlwseeDei +LqG++dfk+ktgk++++d ++fyef+k+sis++vs sq +eKi+  K+Kf +k+kk   gk+    ++h+ k+fels++i
  Carubv10016166m  91 NNQRLWSEEDEIRVLQGIVDFKSKTGKKATEDKSGFYEFIKDSISVEVSLSQCIEKIKTVKRKFMNKRKK---GKK---PEAHNLKSFELSEMI 178
                      579******************************************************************9...555...6789999******** PP

           DUF573  96 Wgs 98 
                      Wgs
  Carubv10016166m 179 WGS 181
                      *95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.6E-2593180IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MHEKPQSPSA SDVATATAKT TKASSEKEDK KKKTVSAASL VAEAKTKKTK KAKKKQVCVS  60
GEAKKRASEE ETSTKDVSAA KRAKKDVKKP NNQRLWSEED EIRVLQGIVD FKSKTGKKAT  120
EDKSGFYEFI KDSISVEVSL SQCIEKIKTV KRKFMNKRKK GKKPEAHNLK SFELSEMIWG  180
SDDAEESRKN EMIKRPEEEE GKDVVILEQI QDWFNNSFLF RQVASFGVDE DSLKRRWSSV  240
DTEKKKMVED KLRVLQTKEL GLVSQKTELL YEVASLIAEE N*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10016166m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006299953.20.0probable transcription factor At1g61730
TrEMBLR0GB850.0R0GB85_9BRAS; Uncharacterized protein
STRINGXP_006299953.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.18e-44DNA-binding storekeeper protein-related transcriptional regulator