PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10016131m
Common NameCARUB_v10016131mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GATA
Protein Properties Length: 298aa    MW: 32517.3 Da    PI: 6.7399
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10016131mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.61.4e-17219255135
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C++Cgt++  Tp++Rrgp+g++tLCnaCGl+++ kg+
  Carubv10016131m 219 CRHCGTSEksTPMMRRGPEGPRTLCNACGLMWANKGT 255
                      **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.40273108IPR010399Tify domain
SMARTSM009791.8E-1273108IPR010399Tify domain
PfamPF062004.1E-1278107IPR010399Tify domain
PROSITE profilePS5101712.858143185IPR010402CCT domain
PfamPF062035.6E-15143185IPR010402CCT domain
PROSITE profilePS501149.407213261IPR000679Zinc finger, GATA-type
SMARTSM004011.9E-10213276IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.24E-13215277No hitNo description
Gene3DG3DSA:3.30.50.105.7E-16218260IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440219246IPR000679Zinc finger, GATA-type
PfamPF003201.7E-15219255IPR000679Zinc finger, GATA-type
CDDcd002021.90E-16219268No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MNGLHGNNGG MHIGVPQDPL HMQYEHQGLH HIDNGDGMMD DHTDGGMDEG VETDIPSHPG  60
NLADNRGEVV DRGIENGDQL TLSFQGQVYV FDHVSPEKVQ AVLLLLGGRE VPQTLPTSLG  120
SPHQNNRVLG LSGTPQRLTV PQRLASLIRF REKRKGRNFD KTIRYTVRKE VALRMQRKKG  180
QFTSAKSSND DSASTGSDWG SSQSWAVEGS EAQKPEILCR HCGTSEKSTP MMRRGPEGPR  240
TLCNACGLMW ANKGTLRDLS KVPPPQTPQN LPVNKNEDPN LEADQMIGVA GDMSNSQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00369DAPTransfer from AT3G21175Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10016131m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0851090.0AY085109.1 Arabidopsis thaliana clone 12996 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006299922.10.0GATA transcription factor 24 isoform X1
SwissprotQ8GXL70.0GAT24_ARATH; GATA transcription factor 24
TrEMBLR0I4990.0R0I499_9BRAS; Uncharacterized protein
STRINGXP_006299922.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36842659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.11e-180ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]