PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10016131m | ||||||||
Common Name | CARUB_v10016131mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | GATA | ||||||||
Protein Properties | Length: 298aa MW: 32517.3 Da PI: 6.7399 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 54.6 | 1.4e-17 | 219 | 255 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cgt++ Tp++Rrgp+g++tLCnaCGl+++ kg+ Carubv10016131m 219 CRHCGTSEksTPMMRRGPEGPRTLCNACGLMWANKGT 255 **********************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 14.402 | 73 | 108 | IPR010399 | Tify domain |
SMART | SM00979 | 1.8E-12 | 73 | 108 | IPR010399 | Tify domain |
Pfam | PF06200 | 4.1E-12 | 78 | 107 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 12.858 | 143 | 185 | IPR010402 | CCT domain |
Pfam | PF06203 | 5.6E-15 | 143 | 185 | IPR010402 | CCT domain |
PROSITE profile | PS50114 | 9.407 | 213 | 261 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.9E-10 | 213 | 276 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.24E-13 | 215 | 277 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 5.7E-16 | 218 | 260 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE pattern | PS00344 | 0 | 219 | 246 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.7E-15 | 219 | 255 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 1.90E-16 | 219 | 268 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MNGLHGNNGG MHIGVPQDPL HMQYEHQGLH HIDNGDGMMD DHTDGGMDEG VETDIPSHPG 60 NLADNRGEVV DRGIENGDQL TLSFQGQVYV FDHVSPEKVQ AVLLLLGGRE VPQTLPTSLG 120 SPHQNNRVLG LSGTPQRLTV PQRLASLIRF REKRKGRNFD KTIRYTVRKE VALRMQRKKG 180 QFTSAKSSND DSASTGSDWG SSQSWAVEGS EAQKPEILCR HCGTSEKSTP MMRRGPEGPR 240 TLCNACGLMW ANKGTLRDLS KVPPPQTPQN LPVNKNEDPN LEADQMIGVA GDMSNSQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00369 | DAP | Transfer from AT3G21175 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10016131m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY085109 | 0.0 | AY085109.1 Arabidopsis thaliana clone 12996 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006299922.1 | 0.0 | GATA transcription factor 24 isoform X1 | ||||
Swissprot | Q8GXL7 | 0.0 | GAT24_ARATH; GATA transcription factor 24 | ||||
TrEMBL | R0I499 | 0.0 | R0I499_9BRAS; Uncharacterized protein | ||||
STRING | XP_006299922.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3684 | 26 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.1 | 1e-180 | ZIM-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10016131m |
Entrez Gene | 17891924 |
Publications ? help Back to Top | |||
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