PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10016090m
Common NameCARUB_v10016090mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 277aa    MW: 29580.5 Da    PI: 8.893
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10016090mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.000786887221
                     EETTTTEEESSHHHHHHHHH CS
          zf-C2H2  2 kCpdCgksFsrksnLkrHir 21
                     +C+ Cgk F +   L  H+r
  Carubv10016090m 68 PCTECGKQFGSLKALFGHMR 87
                     5******************8 PP
2zf-C2H211.40.00099147169123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ C+k+F ++  L  H  tH
  Carubv10016090m 147 FQCGGCKKVFGSHQALGGHRATH 169
                      89**************9999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.9E-106791IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.0766794IPR007087Zinc finger, C2H2
SMARTSM003550.0176789IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.6E-86889No hitNo description
Gene3DG3DSA:3.30.160.604.5E-46989IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
SuperFamilySSF576673.6E-8142169No hitNo description
PfamPF139125.7E-6147170IPR007087Zinc finger, C2H2
PROSITE profilePS501579.494147174IPR007087Zinc finger, C2H2
SMARTSM003551.2147169IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280149171IPR007087Zinc finger, C2H2
PfamPF139121.1E-11217241IPR007087Zinc finger, C2H2
PROSITE profilePS501579.245217244IPR007087Zinc finger, C2H2
SMARTSM003550.13217239IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280219239IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MANTSNSDPS FDIPFASSNV TLPSNSQNPR RKRTKLTNNE TGSSSSPARP KPVKKPLDPN  60
APPQIARPCT ECGKQFGSLK ALFGHMRCHP ERQWRGIIPP PDHKRVSNAT AASSSLNLVS  120
EEEIASYLLL LANGAVTTGT SGVEGRFQCG GCKKVFGSHQ ALGGHRATHK HVKGCFAITN  180
STEDPSPPPP PPPPPPPQEI VDQDKGKSIK LVSGMIHRCN ICFRVFSSGQ ALGGHMRCHW  240
EKDQEENQVS AIDLNVPAAT SPDTSIGCSL DLRLGL*
Functional Description ? help Back to Top
Source Description
UniProtMediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00621PBMTransfer from AT2G17180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10016090m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935502e-93AB493550.1 Arabidopsis thaliana At2g17180 gene for hypothetical protein, partial cds, clone: RAAt2g17180.
GenBankAC0071272e-93AC007127.7 Arabidopsis thaliana chromosome 2 clone T23A1 map mi398, complete sequence.
GenBankCP0026852e-93CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBankDQ0565332e-93DQ056533.1 Arabidopsis thaliana zinc finger (C2H2 type) family protein (At2g17180) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006299883.10.0zinc finger protein ZAT2
SwissprotQ9SIJ01e-137ZAT2_ARATH; Zinc finger protein ZAT2
TrEMBLR0GB190.0R0GB19_9BRAS; Uncharacterized protein
STRINGXP_006299883.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46191836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.11e-138C2H2-like zinc finger protein