PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10015990m | ||||||||
Common Name | CARUB_v10015990mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | NAC | ||||||||
Protein Properties | Length: 312aa MW: 35301.4 Da PI: 6.6774 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 181.1 | 2.8e-56 | 5 | 131 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeel+++yL++kv+++ ++ +++ +vd++k+ePwdLp+k++ +ekewyfFs+rd+ky+tg r+nrat++gyWk+tgkdke+++ Carubv10015990m 5 LPPGFRFHPTDEELITHYLCRKVSDTGFTG-KAVVDVDLNKCEPWDLPAKASMGEKEWYFFSQRDRKYPTGLRTNRATEAGYWKTTGKDKEIYR 97 79*************************999.88***************999999**************************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129 +g lvg+kktLvfykgrapkgek++Wvmheyrle Carubv10015990m 98 -SGMLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 131 .999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.98E-64 | 4 | 152 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.809 | 5 | 152 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-29 | 6 | 130 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MEDHLPPGFR FHPTDEELIT HYLCRKVSDT GFTGKAVVDV DLNKCEPWDL PAKASMGEKE 60 WYFFSQRDRK YPTGLRTNRA TEAGYWKTTG KDKEIYRSGM LVGMKKTLVF YKGRAPKGEK 120 SNWVMHEYRL ESKQPFNPTN KEEWVVCRVF EKSTATKKAQ EQQPQSSQPS FGSPCDANSS 180 MANEFEDIEL PNLNSNSSTI DYNNQIHQYN SQRNVYSEDN TTSTAGLNMA SSNIPSWTTS 240 LLGPPLSPIN SLLLKAFQIR NTYGFQKEMI PNFNPSPLQQ GVVSNIMQNG SSSSQAQAQP 300 QEEAFNMDSI W* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-60 | 5 | 158 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-60 | 5 | 158 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-60 | 5 | 158 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-60 | 5 | 158 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-60 | 5 | 158 | 20 | 174 | NAC domain-containing protein 19 |
3swm_B | 6e-60 | 5 | 158 | 20 | 174 | NAC domain-containing protein 19 |
3swm_C | 6e-60 | 5 | 158 | 20 | 174 | NAC domain-containing protein 19 |
3swm_D | 6e-60 | 5 | 158 | 20 | 174 | NAC domain-containing protein 19 |
3swp_A | 6e-60 | 5 | 158 | 20 | 174 | NAC domain-containing protein 19 |
3swp_B | 6e-60 | 5 | 158 | 20 | 174 | NAC domain-containing protein 19 |
3swp_C | 6e-60 | 5 | 158 | 20 | 174 | NAC domain-containing protein 19 |
3swp_D | 6e-60 | 5 | 158 | 20 | 174 | NAC domain-containing protein 19 |
4dul_A | 6e-60 | 5 | 158 | 17 | 171 | NAC domain-containing protein 19 |
4dul_B | 6e-60 | 5 | 158 | 17 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00364 | DAP | Transfer from AT3G18400 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10015990m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB026658 | 1e-149 | AB026658.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MYF24. | |||
GenBank | CP002686 | 1e-149 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006299794.1 | 0.0 | NAC domain-containing protein 100 | ||||
Swissprot | Q9FLJ2 | 8e-83 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | R0GAF3 | 0.0 | R0GAF3_9BRAS; Uncharacterized protein | ||||
STRING | XP_006299794.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5527 | 26 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18400.1 | 0.0 | NAC domain containing protein 58 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10015990m |
Entrez Gene | 17890737 |
Publications ? help Back to Top | |||
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