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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Carubv10015988m |
| Common Name | CARUB_v10015988mg |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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| Family |
GRAS |
| Protein Properties |
Length: 506aa MW: 56688.8 Da PI: 4.9763 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Carubv10015988m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 261.7 | 2.6e-80 | 145 | 505 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl...fsevsPilk 92
++lL cA a++s++ +++q++L+ lselas++gd+++Rlaa+ ++AL+++l++s+s p+ + + s+e+ +++k+ f+evsP++
Carubv10015988m 145 EQLLNPCALAITSRNSSRVQHYLCVLSELASSSGDANRRLAAFGLRALQHHLSSSSS------PVVTFA---SAEAKMFQKTllkFYEVSPWFA 229
689***************************************************433......333443...2222233333335********* PP
GRAS 93 fshltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg....skeeleetgerLakfAeelgvpf 176
+ + +aN+aIl+ ++++ + +Hi+D+++s+G+QWp+Ll+aL+ Rpegpp ++RiT+v++p+s+ ++g rL fA++l++++
Carubv10015988m 230 LPNNMANSAILQILAQDpidkkKDLHIVDIGVSHGMQWPTLLEALSGRPEGPPhRVRITVVSEPSSDipfsAVPPAYSYGTRLIGFARSLNINL 323
************9988777766889************************888868***********9*99888999****************** PP
GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfd 269
+++vl +++ ++++p+E+l+V+++++lh+l +s+ +er e L +++sl Pk vv++e++ ++ + ++F+++f+ +ley ++++d
Carubv10015988m 324 HISVL-------DKFQLINTSPHENLIVCVQFRLHQLN---HSMLDERGEALIALRSLGPKGVVLCENNGECtSIGDFAAGFSMKLEYLWKFLD 407
***96.......4568889******************8...77777789***********************7789****************** PP
GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.eesgslv.lg 361
s+++++ +e+ + Er+l+++e+++v+++ + +e +ekW er+ +aGF + +++e+a + ak+llrk++++ +++ e+ g++ l+
Carubv10015988m 408 STSSGF----KEEDSEERKLMEEEATKVLMTGEYV----NEGKEKWFERMIKAGFVAEEFGEDAIDGAKSLLRKYDNN-WEIRmEDGGTFAgLM 492
**9997....677777888888999**99998887....999**********************************44.6666344444447** PP
GRAS 362 WkdrpLvsvSaWr 374
Wk++++ ++S W+
Carubv10015988m 493 WKGESVSFCSLWK 505
************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0042446 | Biological Process | hormone biosynthetic process |
| GO:2000032 | Biological Process | regulation of secondary shoot formation |
| Sequence ? help Back to Top |
| Protein Sequence Length: 506 aa
Download sequence Send
to blast |
MSLEETEPVN QTLDHVLGWL EDSMSLTPLP EFDDSDLLHE FDGSQTWEWD QTQDPEHGFI 60
QSYSQDLSAC GGFEATNLEL VSEAPFMYSD PPPQLQQPND QSRKRSSNEL IQPQHVKRSA 120
RSKKKSNKSS EKSSKDGNKE ERWAEQLLNP CALAITSRNS SRVQHYLCVL SELASSSGDA 180
NRRLAAFGLR ALQHHLSSSS SPVVTFASAE AKMFQKTLLK FYEVSPWFAL PNNMANSAIL 240
QILAQDPIDK KKDLHIVDIG VSHGMQWPTL LEALSGRPEG PPHRVRITVV SEPSSDIPFS 300
AVPPAYSYGT RLIGFARSLN INLHISVLDK FQLINTSPHE NLIVCVQFRL HQLNHSMLDE 360
RGEALIALRS LGPKGVVLCE NNGECTSIGD FAAGFSMKLE YLWKFLDSTS SGFKEEDSEE 420
RKLMEEEATK VLMTGEYVNE GKEKWFERMI KAGFVAEEFG EDAIDGAKSL LRKYDNNWEI 480
RMEDGGTFAG LMWKGESVSF CSLWK*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC237328 | 0.0 | AC237328.1 Arabidopsis lyrata clone JGIFAFI-41L7, complete sequence. |
