PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Carubv10015883m | ||||||||
Common Name | CARUB_v10015883mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 472aa MW: 53843.9 Da PI: 7.5791 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 95 | 7e-30 | 90 | 176 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea Carubv10015883m 90 RWPRQETLMLLEVRSRLDHKFKESNQKGPLWDEVSRIMsEEHGYTRSGKKCREKFENLYKYYKKTKEGKAGR-RQDGKNYRFFRQLEA 176 8*************************************999*****************************98.77888********85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 4.8E-4 | 87 | 150 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 7.097 | 89 | 148 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 6.9E-20 | 90 | 177 | No hit | No description |
CDD | cd12203 | 6.73E-19 | 90 | 155 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010197 | Biological Process | polar nucleus fusion |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 472 aa Download sequence Send to blast |
MEDHHHQNHQ VQYGIAQPSL HFSSDLFGFN LVSAPDQHHR PHLTDHEISF LPRGIQGLTV 60 AGNNSNSIVA STSCARGGFS GFTDGGGTGR WPRQETLMLL EVRSRLDHKF KESNQKGPLW 120 DEVSRIMSEE HGYTRSGKKC REKFENLYKY YKKTKEGKAG RRQDGKNYRF FRQLEAIYGE 180 SKDSVSCYDN SQFIMTNALH SFHAPNIHHN AVSHIHQNPL SNNTQSLSIS NNLNSSSELD 240 ISSSSEGNVS TRSEGMNWKA KIKEFIGIHI ERLIEKQDFW LEKLVKTVED KEHQRMVKEE 300 EWKRVEAARI EKERSLWTKE RERMEARDVA VIEALQYLTG KALIRPNSSS PTERINGNIS 360 DQTMADEENK SKMEKKIMSK KRKEKWSSHG GNQLRIKENT MMIYDNQEDP SCDVEQGHHE 420 GYSPSNSKEG NPSCGIAMAA STNCFPMLVG DGDQNSWEGY GLKLRKEDNH Q* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Carubv10015883m |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006299692.1 | 0.0 | trihelix transcription factor PTL | ||||
Swissprot | Q9LZS0 | 1e-132 | PTL_ARATH; Trihelix transcription factor PTL | ||||
TrEMBL | R0I3S2 | 0.0 | R0I3S2_9BRAS; Uncharacterized protein | ||||
STRING | XP_006299692.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2767 | 28 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G10000.1 | 0.0 | Trihelix family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Carubv10015883m |
Entrez Gene | 17890582 |
Publications ? help Back to Top | |||
---|---|---|---|
|