PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10015789m
Common NameCARUB_v10015789mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 332aa    MW: 39001.3 Da    PI: 10.1526
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10015789mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.52.1e-1719111197
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgrsefelv 93 
                      ffk++ ++d +++++  +p +f++++ +k   s +++++ ++g+sW+v++  +k+ + y+++  GW +Fv++n L  ++fv+F ++g++ f  +
  Carubv10015789m  19 FFKIFQSADLSSESMRAFPYNFMSRIPEK-DLSYKMVIRAQWGKSWDVEV--SKNTRYYYIEkPGWDQFVSDNALGRNEFVTFIHKGKMIF--N 107
                      99***99*******************544.5999****************..999988666637********************9998888..6 PP

                      EEEE CS
               B3  94 vkvf 97 
                      v ++
  Carubv10015789m 108 VYIY 111
                      6665 PP
2B332.61.4e-102363101087
                      HHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3  10 vlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      ++ ++ l +pk+f+++h  +  +sk  t+ +++g +sW+v +    +  r+++++G ++ +++  L +gD ++Fkl++ 
  Carubv10015789m 236 NSYLKFLAIPKHFVDDHLPQ--KSKFFTIHHPDGlKSWKVLC--LVREIRTIFSGGYSKLAREYPLLVGDKCTFKLIEP 310
                      44456799*********644..67789999************..8888899************************9864 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-1718115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-1718119IPR015300DNA-binding pseudobarrel domain
PfamPF023628.0E-1619111IPR003340B3 DNA binding domain
CDDcd100176.52E-1619111No hitNo description
PROSITE profilePS5086312.87219114IPR003340B3 DNA binding domain
SMARTSM010194.0E-1919114IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-16227319IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-14227320IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.432227321IPR003340B3 DNA binding domain
CDDcd100171.93E-12228309No hitNo description
SMARTSM010196.9E-14230321IPR003340B3 DNA binding domain
PfamPF023627.1E-9233310IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MGWNTGFERI KQERKDLGFF KIFQSADLSS ESMRAFPYNF MSRIPEKDLS YKMVIRAQWG  60
KSWDVEVSKN TRYYYIEKPG WDQFVSDNAL GRNEFVTFIH KGKMIFNVYI YEQNCMEILI  120
PRILMPMDCS GGIKREEEEC SYKDVKKEYE ETDESPERVE IKIRKKISEE SKTSKKKKTS  180
KRVKNGMERG GSSRGVELKA RQKKAEAYNT SKKMKKKIKR NKKMTGAPEF KITIRNSYLK  240
FLAIPKHFVD DHLPQKSKFF TIHHPDGLKS WKVLCLVREI RTIFSGGYSK LAREYPLLVG  300
DKCTFKLIEP YAFILDISKK TREEITHCMI D*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163177RKKISEESKTSKKKK
2211219KKMKKKIKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10015789m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023641319.10.0B3 domain-containing protein At3g17010
SwissprotQ9LSP61e-135Y3701_ARATH; B3 domain-containing protein At3g17010
TrEMBLR0I7T00.0R0I7T0_9BRAS; Uncharacterized protein
STRINGXP_006299610.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17010.11e-128B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]