PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10015496m

Common Name

CARUB_v10015496mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

Protein Properties

Length: 304aa MW: 35102 Da PI: 10.3334

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10015496m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	68.6	8.6e-22	19	113	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 ffk+ + dv ++++ lp +f+++++ ke s ++++++++grsWev++ +k+++ ++ ++GW +Fvk+n L +f++F+++g+++f + Carubv10015496m 19 FFKAVQSIDVASENMRALPHDFVRSFSD-KELSCKMKIRTQWGRSWEVEI--SKNPRFyFMEKSGWDKFVKDNALGHSEFLTFTHNGNMCF--T 107 89999****************99965.57899************..**555569*************************..9 PP EEEE-S CS B3 94 vkvfrk 99 v +f++ Carubv10015496m 108 VNIFKQ 113 999976 PP
2	B3	36.8	6.8e-12	228	300	17	96
E--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 17 vlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ++p +fa++h+ +ee+++ ++ +++g +sW+v + ++ +s +++GW++ vk+ L+ gD++ F+l++ +e l++ v Carubv10015496m 228 RIPVSFAKDHM--PEEKTMFKIHHQDGkKSWNVIYLMKFRS----FSGGWRSVVKEYPLDPGDTCKFTLIEPNE--LLLVV 300 79******7..4466789999999989**555555....89*******************997433..34444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.3E-20	14	115	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.08E-20	15	120	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	14.057	19	114	IPR003340	B3 DNA binding domain
CDD	cd10017	9.67E-19	19	112	No hit	No description
Pfam	PF02362	1.2E-19	19	113	IPR003340	B3 DNA binding domain
SMART	SM01019	5.9E-23	19	114	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	5.69E-15	208	302	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	3.2E-13	210	302	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	10.264	212	303	IPR003340	B3 DNA binding domain
SMART	SM01019	1.3E-15	215	303	IPR003340	B3 DNA binding domain
Pfam	PF02362	5.2E-9	228	297	IPR003340	B3 DNA binding domain
CDD	cd10017	6.24E-10	228	301	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MARNGDYLRC LQERKHEGFF KAVQSIDVAS ENMRALPHDF VRSFSDKELS CKMKIRTQWG 60 RSWEVEISKN PRFYFMEKSG WDKFVKDNAL GHSEFLTFTH NGNMCFTVNI FKQNGKEMLQ 120 PSHSRAFLAS SSRVKTEQRR GSVYNDFKKE EVLSPELSNR SPTTVVESNG GESYKRKLSF 180 GKKKAEETQN SKRTEKVVRA RRDSAGASSS SVSEFTILFK KANQIFQRIP VSFAKDHMPE 240 EKTMFKIHHQ DGKKSWNVIY LMKFRSFSGG WRSVVKEYPL DPGDTCKFTL IEPNELLLVV 300 FKP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10015496m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006299339.1	0.0	B3 domain-containing protein At2g16210
Swissprot	Q5BPT7	1e-133	Y2621_ARATH; B3 domain-containing protein At2g16210
TrEMBL	R0G9A5	0.0	R0G9A5_9BRAS; Uncharacterized protein
STRING	XP_006299339.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM565	21	135

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16210.1	1e-129	B3 family protein

Link Out ? help Back to Top
Phytozome	Carubv10015496m
Entrez Gene	17891901

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]