PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10015397m | ||||||||
Common Name | CARUB_v10015397mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | GeBP | ||||||||
Protein Properties | Length: 229aa MW: 25400.9 Da PI: 4.4856 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 93.7 | 2e-29 | 119 | 211 | 2 | 98 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsk.sqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 +fqr+wse+Dei+lLqGli++++ktg+s s+d++af++ +++sisf++++ +q+++Ki L+kK+k+++ + + f++ehd +fel kk Carubv10015397m 119 RFQRVWSEKDEIMLLQGLIEYQSKTGQSDSEDMNAFFHSIQRSISFEMKSvRQMTSKIWFLRKKYKNEKGQ-----KRCFTEEHDLTCFELVKK 207 69*********************************************96438*************998777.....889*************** PP DUF573 95 iWgs 98 iWgs Carubv10015397m 208 IWGS 211 **95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 5.2E-26 | 120 | 210 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MAWESSSDEE EDSGFEEEEG GASTAKKTSV PESAPRESSN DEDEESASDK EEEEDSAPVV 60 ATGFAYAHVS ASLVAATASS DSKETESRSA PAPASSHKKR QITEVAAALT VAKRAKNVRF 120 QRVWSEKDEI MLLQGLIEYQ SKTGQSDSED MNAFFHSIQR SISFEMKSVR QMTSKIWFLR 180 KKYKNEKGQK RCFTEEHDLT CFELVKKIWG SEVIDSTIAE VDFTVPSD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10015397m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023641969.1 | 1e-104 | probable transcription factor At4g00610 | ||||
TrEMBL | R0G9D6 | 1e-164 | R0G9D6_9BRAS; Uncharacterized protein | ||||
STRING | XP_006299248.1 | 1e-165 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM313 | 28 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00390.1 | 4e-24 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Carubv10015397m |
Entrez Gene | 17892356 |