PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10015363m
Common NameCARUB_v10015363mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family LBD
Protein Properties Length: 265aa    MW: 28316.2 Da    PI: 7.7134
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10015363mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.52.4e-294107199
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                      +C++C+vlr++C++dC ++p++     p++q++++ +++k++G++ +++l++a p++ r+ +++sl+ eA+ r+ +P+yG+vg+++++++ql+q
  Carubv10015363m   4 SCNGCRVLRKGCSEDCSIRPCLawiksPEAQANATVFLAKFYGRAGLMNLINAGPDHLRPGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQ 97 
                      6********************************************************************************************* PP

           DUF260  90 lkaelallke 99 
                       ++e+++ +e
  Carubv10015363m  98 DAVEAVMKGE 107
                      **99988766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381551.7E-1011264IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089116.1333109IPR004883Lateral organ boundaries, LOB
PfamPF031951.9E-234103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSEDCS IRPCLAWIKS PEAQANATVF LAKFYGRAGL MNLINAGPDH  60
LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQDAV EAVMKGEPIT EIATDAATIG  120
QGPPLKIYDI RHNSKDDNSA AATGSTDLKR AKTRRAKRVA ALEKQAESEG KSGGGEASHE  180
SSLSHQSEIV AAHEGESKES ESNASEVLAL SPPTVQGSGE IKLDLTLGLE PVSHAYDVVP  240
VKKRRIGVFG TCQKESTCKT ELML*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10015363m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0860610.0AY086061.1 Arabidopsis thaliana clone 20907 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006299215.10.0LOB domain-containing protein 41
SwissprotQ9M8861e-178LBD41_ARATH; LOB domain-containing protein 41
TrEMBLR0I6Q70.0R0I6Q7_9BRAS; Uncharacterized protein
STRINGXP_006299215.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77212741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-159LOB domain-containing protein 41