PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10015062m

Common Name

CARUB_v10015062mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

G2-like

Protein Properties

Length: 296aa MW: 32188.4 Da PI: 7.1008

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10015062m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.1	9.7e-34	41	95	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl Carubv10015062m 41 KPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKFRL 95 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.938	38	98	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-32	38	97	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.73E-17	40	96	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.8E-24	41	96	IPR006447	Myb domain, plants
Pfam	PF00249	7.2E-8	43	93	IPR001005	SANT/Myb domain
Pfam	PF14379	1.1E-26	139	185	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010628	Biological Process	positive regulation of gene expression
GO:0016036	Biological Process	cellular response to phosphate starvation
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MYSAIRSLPL DGGHVGPDYH GPLDGTNLPG DACLVLTTDP KPRLRWTAEL HERFVDAVTQ 60 LGGPDKATPK TIMRTMGVKG LTLYHLKSHL QKFRLGRQAC KESTENSKDA SCVGESQDTG 120 SSSTSSLRMA QQEQNEGYQV TEALRAQMEV QRRLHEQLEV QRRLQLRIEA QGKYLQSILE 180 KACKAFDEQA AAFAGLEAAR EELSELAIKV SNVSQGTTVP FFDATKMMMM PSLSELAVAI 240 DNKNNITTNC SVESSLTSVT NGSSISAASM KKRQRGDNMG VGYDAGWIMP SSTIG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	3e-19	41	97	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-19	41	97	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-19	41	97	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-19	41	97	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00378	DAP	Transfer from AT3G24120	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10015062m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY050355	0.0	AY050355.1 Arabidopsis thaliana AT3g24120/MUJ8_3 mRNA, complete cds.
GenBank	AY088428	0.0	AY088428.1 Arabidopsis thaliana clone 6626 mRNA, complete sequence.
GenBank	AY094046	0.0	AY094046.1 Arabidopsis thaliana AT3g24120/MUJ8_3 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006298939.1	0.0	protein PHR1-LIKE 2 isoform X2
Swissprot	Q94A57	0.0	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	R0G876	0.0	R0G876_9BRAS; Uncharacterized protein
STRING	XP_006298939.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3515	25	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	0.0	G2-like family protein

Link Out ? help Back to Top
Phytozome	Carubv10015062m
Entrez Gene	17893774

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]