PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10014873m | ||||||||
Common Name | CARUB_v10014873mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | ERF | ||||||||
Protein Properties | Length: 142aa MW: 15749.1 Da PI: 5.0294 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.1 | 2.5e-19 | 13 | 64 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ +g+++AeIrd ++ +r++lg+f taeeAa+a+++a+ +++ge Carubv10014873m 13 KYRGVRTRP-WGKYAAEIRD----SaRHgARVWLGTFHTAEEAARAYDRAAFSMRGE 64 8*****999.**********....33236**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.01E-23 | 13 | 73 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.5E-35 | 13 | 77 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-31 | 13 | 73 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.72E-27 | 13 | 72 | No hit | No description |
PROSITE profile | PS51032 | 23.406 | 13 | 71 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.0E-14 | 13 | 64 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-11 | 14 | 25 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-11 | 37 | 53 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
MERRESSNTN EVKYRGVRTR PWGKYAAEIR DSARHGARVW LGTFHTAEEA ARAYDRAAFS 60 MRGERAVLNF PHEYPMMRNG PSSGYGNVVA PSSTEYGGGG GGGGGNGKEV IEFEYLDDSL 120 LEELLDYGEN YNQDTWNDAN R* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-35 | 13 | 120 | 14 | 114 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00373 | DAP | Transfer from AT3G23220 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10014873m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006298771.1 | 1e-100 | ethylene-responsive transcription factor ERF095 | ||||
Swissprot | Q9LTC6 | 2e-47 | ERF95_ARATH; Ethylene-responsive transcription factor ERF095 | ||||
TrEMBL | R0HPH4 | 2e-98 | R0HPH4_9BRAS; Uncharacterized protein | ||||
STRING | XP_006298771.1 | 3e-99 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23220.1 | 3e-41 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10014873m |
Entrez Gene | 17892037 |
Publications ? help Back to Top | |||
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