PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10014665m | ||||||||
Common Name | CARUB_v10014665mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | GATA | ||||||||
Protein Properties | Length: 203aa MW: 22153.9 Da PI: 9.6123 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 57.3 | 2.2e-18 | 56 | 90 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ Cgt+ TplWR gp g+k+LCnaCG++ rkk++ Carubv10014665m 56 CVDCGTIRTPLWRGGPAGPKSLCNACGIKSRKKRQ 90 *********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 12.215 | 50 | 86 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 3.5E-12 | 50 | 105 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.05E-11 | 51 | 91 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 7.8E-15 | 54 | 90 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.14E-12 | 55 | 110 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 56 | 81 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 3.8E-16 | 56 | 90 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MVLIVINFFP FSKMSEGSEE TKTKIDSAEE LSDVDNENCS SSGSGGGSCG ETKRTCVDCG 60 TIRTPLWRGG PAGPKSLCNA CGIKSRKKRQ AALGMRSDEK KKNRKSNSSN DLNLDHRNAK 120 NNKINRDDDD NDDHHKTCNS KSSSSSNITN NNKGVSKFLD LGFKVPVMKR SAVEKKRLWR 180 KLGEEERAAV LLMALSCSSV YA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10014665m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023642276.1 | 1e-135 | GATA transcription factor 17 | ||||
Swissprot | Q9LIB5 | 4e-93 | GAT17_ARATH; GATA transcription factor 17 | ||||
TrEMBL | R0HP19 | 1e-145 | R0HP19_9BRAS; Uncharacterized protein | ||||
STRING | XP_006298581.1 | 1e-145 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12643 | 15 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16870.1 | 2e-71 | GATA transcription factor 17 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10014665m |
Entrez Gene | 17893076 |
Publications ? help Back to Top | |||
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