PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10014603m | ||||||||
Common Name | CARUB_v10014603mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 217aa MW: 25036 Da PI: 5.0699 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.8 | 2.2e-19 | 59 | 112 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++++eq++ Le Fe ++++ e++ +LA +lgL+ rqV vWFqNrRa++k+ Carubv10014603m 59 KRKLSDEQVRMLEISFEDDHKLESERKDRLALELGLDPRQVAVWFQNRRARWKN 112 45899***********************************************95 PP | |||||||
2 | HD-ZIP_I/II | 121.5 | 4.3e-39 | 58 | 149 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kr+ls+eqv++LE sFe ++kLe+erK +la eLgl+prqvavWFqnrRAR+k+k++E +y++Lk+ay++++ +++rL++ev +L+e+l+e Carubv10014603m 58 RKRKLSDEQVRMLEISFEDDHKLESERKDRLALELGLDPRQVAVWFQNRRARWKNKRVEDEYTKLKNAYENVVVDKCRLDSEVLQLKEQLNE 149 8****************************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.763 | 53 | 113 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.71E-18 | 56 | 120 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.4E-19 | 56 | 117 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.86E-17 | 58 | 114 | No hit | No description |
Pfam | PF00046 | 1.2E-16 | 59 | 112 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-20 | 60 | 119 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.5E-5 | 84 | 93 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 88 | 111 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.5E-5 | 93 | 109 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MNNQNVDDHN LLLISQLYPD VYTPLVPQQA GEAKQARRRK RKSKSVAVAE EGGNGWFRKR 60 KLSDEQVRML EISFEDDHKL ESERKDRLAL ELGLDPRQVA VWFQNRRARW KNKRVEDEYT 120 KLKNAYENVV VDKCRLDSEV LQLKEQLNEA EREIQRLAQR VEGTLSNSPI SSSVTVEANH 180 ATPFFGDYDI GVDGDGDNLI YSSDYIDGLE WMSQFM* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 39 | 60 | KRKSKSVAVAEEGGNGWFRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10014603m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT031362 | 0.0 | BT031362.1 Arabidopsis thaliana unknown protein (At2g18550) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006298526.1 | 1e-159 | homeobox-leucine zipper protein ATHB-21 isoform X1 | ||||
Swissprot | Q9ZU70 | 1e-142 | ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21 | ||||
TrEMBL | R0HNW1 | 1e-158 | R0HNW1_9BRAS; Uncharacterized protein | ||||
STRING | XP_006298526.1 | 1e-159 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2208 | 26 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18550.1 | 1e-122 | homeobox protein 21 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10014603m |
Entrez Gene | 17892534 |
Publications ? help Back to Top | |||
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