PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10014563m | ||||||||
Common Name | CARUB_v10014563mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | ERF | ||||||||
Protein Properties | Length: 227aa MW: 25490.5 Da PI: 4.8738 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.5 | 4e-19 | 78 | 127 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r ++ +g+W+AeIrdp++ r++lg+f taeeAa a++ a+k+++g Carubv10014563m 78 VYRGIRKRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAAVAYDVAAKRIRG 127 69*******.**********954...4************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 6.41E-23 | 78 | 136 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.1E-36 | 78 | 141 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-32 | 78 | 136 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.21 | 78 | 135 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-12 | 78 | 127 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-11 | 79 | 90 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.22E-32 | 79 | 137 | No hit | No description |
PRINTS | PR00367 | 2.3E-11 | 101 | 117 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008219 | Biological Process | cell death | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051707 | Biological Process | response to other organism | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MCGGAIISDF APLVTKAKGR KLTAEELWSE LDVSAGDNFW GFDSTSNLHP TNQGNVKEEA 60 AGKKKEPETE KRRKRKNVYR GIRKRPWGKW AAEIRDPRKG VRVWLGTFNT AEEAAVAYDV 120 AAKRIRGDKA KLNFPDLTHH PPAKKLCVSE LAQPVECIGF GDGDEFQNQS YGFEHDYYDL 180 KQQISSLESF LELDGTTAEE EEPSRLDDTV SEVDMWMLDD VIASYE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-22 | 79 | 135 | 6 | 63 | ATERF1 |
3gcc_A | 2e-22 | 79 | 135 | 6 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 71 | 85 | RRKRKNVYRGIRKRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9159183}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00109 | PBM | Transfer from AT3G16770 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10014563m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9159183}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ001911 | 1e-143 | AJ001911.1 Arabidopsis thaliana mRNA for ethylene-responsive element binding protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006298489.1 | 1e-169 | ethylene-responsive transcription factor RAP2-3 | ||||
Swissprot | P42736 | 1e-131 | RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3 | ||||
TrEMBL | R0G6Z7 | 1e-167 | R0G6Z7_9BRAS; Uncharacterized protein | ||||
STRING | XP_006298489.1 | 1e-168 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 1e-114 | ethylene-responsive element binding protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10014563m |
Entrez Gene | 17890597 |