PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10014554m | ||||||||
Common Name | CARUB_v10014365mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | GATA | ||||||||
Protein Properties | Length: 228aa MW: 24504.6 Da PI: 10.1195 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 62.7 | 4.3e-20 | 151 | 185 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+ kTp+WR gp+g+ktLCnaCG++y++ +l Carubv10014554m 151 CQHCGAEKTPQWRAGPSGPKTLCNACGVRYKSGRL 185 *******************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.6E-17 | 145 | 195 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.56E-15 | 148 | 208 | No hit | No description |
PROSITE profile | PS50114 | 12.281 | 148 | 181 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.5E-15 | 149 | 183 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.64E-14 | 150 | 197 | No hit | No description |
Pfam | PF00320 | 1.4E-17 | 151 | 185 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 151 | 176 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MFLVNGPGVV EEEDLEWISN KDAFPVIETF VGVLPPEHFR VTSPERVATE IKQLSPVSVL 60 ETSSHNSSTT TSTTTTTSNS SGGSTAVTTT TAATLMSCCV SFKAPAKARS KRRRTGRRDL 120 RVLWTGNEQG GGGGGIQKKK TTAAVIMGRK CQHCGAEKTP QWRAGPSGPK TLCNACGVRY 180 KSGRLVPEYR PANSPTFTAE LHSNSHRKIV EMRKQYQSGD GDRKDCG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00377 | DAP | Transfer from AT3G24050 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10014554m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK227493 | 1e-118 | AK227493.1 Arabidopsis thaliana mRNA for GATA transcription factor 1, complete cds, clone: RAFL14-11-O16. | |||
GenBank | AP001297 | 1e-118 | AP001297.1 Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone:F14O13. | |||
GenBank | BT024497 | 1e-118 | BT024497.1 Arabidopsis thaliana At3g24050 mRNA, complete cds. | |||
GenBank | CP002686 | 1e-118 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. | |||
GenBank | Y13648 | 1e-118 | Y13648.1 Arabidopsis thaliana mRNA for GATA transcription factor 1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006298300.1 | 1e-168 | GATA transcription factor 1 isoform X2 | ||||
Swissprot | Q8LAU9 | 1e-104 | GATA1_ARATH; GATA transcription factor 1 | ||||
TrEMBL | R0I4E2 | 1e-167 | R0I4E2_9BRAS; Uncharacterized protein | ||||
STRING | XP_006298301.1 | 1e-119 | (Capsella rubella) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24050.1 | 2e-94 | GATA transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10014554m |
Entrez Gene | 17892358 |