PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10014541m
Common NameCARUB_v10014541mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GATA
Protein Properties Length: 232aa    MW: 25694 Da    PI: 7.6566
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10014541mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.69.4e-20117151135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C++C tt+TplWR+gp g+k+LCnaCG++++k+++
  Carubv10014541m 117 CASCDTTSTPLWRNGPKGPKSLCNACGIRFKKEER 151
                      ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.455111147IPR000679Zinc finger, GATA-type
SMARTSM004016.1E-20111163IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.33E-13111152No hitNo description
Gene3DG3DSA:3.30.50.101.4E-16115151IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.93E-14116148No hitNo description
PfamPF003202.1E-17117151IPR000679Zinc finger, GATA-type
PROSITE patternPS003440117142IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
ITKPPKHNTH ISLSLFDLVY IFMMGYQTNP NFSMFFSSEN DDQNQYSYDH YNDLSSSTSV  60
DCTLSLGTPS TRLDDHRRFS NAGSNNISGD FYFHGGNAKT TSYKKSGGGD HSLPRRCASC  120
DTTSTPLWRN GPKGPKSLCN ACGIRFKKEE RRATARNLTI SGGGSSAAEL PVENPYNGGG  180
NYYGHHHHHY ATSSPSWAHQ NTQRVPYFSQ APEMEYPYVD DATAASFMSW N*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00110ampDAPTransfer from AT2G18380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10014541m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0295050.0BT029505.1 Arabidopsis thaliana At2g18380 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006296733.21e-156GATA transcription factor 20
SwissprotQ9ZPX01e-123GAT20_ARATH; GATA transcription factor 20
TrEMBLR0G2T81e-173R0G2T8_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006296733.11e-174(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61591746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18380.11e-120GATA transcription factor 20
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]