PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10014503m
Common NameCARUB_v10014503mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 243aa    MW: 27679.8 Da    PI: 8.1993
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10014503mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.7e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg WT eEd +lv ++++ G ++W + a++ g+ R++k+c++rw++yl
  Carubv10014503m 14 RGEWTVEEDRKLVAYIEENGLDNWGLLAKRAGLQRCGKSCRLRWLNYL 61
                     89********************************************97 PP
2Myb_DNA-binding49.21.2e-1567111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +++++E++ +++ +++lG++ W+ Ia+ ++ +Rt+ ++k++w++ 
  Carubv10014503m  67 RSKFSPQEEQEIIKFHALLGNR-WSVIAKQIP-NRTDHDIKNHWNSC 111
                      789*******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.093961IPR017930Myb domain
SuperFamilySSF466891.87E-2811108IPR009057Homeodomain-like
SMARTSM007179.0E-141363IPR001005SANT/Myb domain
PfamPF002496.2E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-221568IPR009057Homeodomain-like
CDDcd001676.13E-111661No hitNo description
PROSITE profilePS5129424.36562116IPR017930Myb domain
SMARTSM007173.6E-1466114IPR001005SANT/Myb domain
PfamPF002491.0E-1467111IPR001005SANT/Myb domain
CDDcd001671.21E-969109No hitNo description
Gene3DG3DSA:1.10.10.602.3E-2369116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MGRMTWFDVD GMKRGEWTVE EDRKLVAYIE ENGLDNWGLL AKRAGLQRCG KSCRLRWLNY  60
LRPGIKRSKF SPQEEQEIIK FHALLGNRWS VIAKQIPNRT DHDIKNHWNS CLKKRLAKGR  120
TDPMMTPEPA LVTVDEATST STRSPSPAPS TTFSSTGFAR LLNKLAAGIA SRKYRLDKIK  180
MLILTEQPRE ASAKENMLIT MEEEDLITCF MDIDEKLSTA SFCELPCCED STYCYATSDW  240
LN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10014503m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2546080.0AC254608.1 Capsella rubella clone CAP16-D12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006298432.10.0transcription factor MYB106
SwissprotQ9LE634e-50MY106_ARATH; Transcription factor MYB106
TrEMBLR0I0D00.0R0I0D0_9BRAS; Uncharacterized protein
STRINGXP_006298432.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74430.11e-100myb domain protein 95