PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10014475m | ||||||||
Common Name | CARUB_v10014475mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | ERF | ||||||||
Protein Properties | Length: 250aa MW: 27081.1 Da PI: 9.0475 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.3 | 5e-20 | 25 | 75 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr ++ +gr++AeIrdp + + r++lg+f++aeeAa+a++ a+++l+g Carubv10014475m 25 PRYRGVRKRP-WGRFAAEIRDPLK---KSRVWLGTFDSAEEAARAYDTAARNLRG 75 68********.**********743...5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.55E-31 | 25 | 85 | No hit | No description |
Pfam | PF00847 | 1.8E-13 | 25 | 75 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-22 | 26 | 85 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-32 | 26 | 83 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.3E-39 | 26 | 89 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.999 | 26 | 83 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.3E-11 | 27 | 38 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.3E-11 | 49 | 65 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MRKGRGSSVV GPALPVTAGG SVKEPRYRGV RKRPWGRFAA EIRDPLKKSR VWLGTFDSAE 60 EAARAYDTAA RNLRGPKAKT NFPIDCSPSS PLNYHHNQNQ NQNQNLCSAA AAPANQNQNQ 120 IDPFMDHRLY GGGNFQNQQQ QIISRPASSS MSSTVKSCSG PRPMEAASSS VAKPLHATKR 180 YPRTPPVAPE DCHSDCDSSS SVIDDGDDIA SSSSRRKPPF QFDLNFPPLD GVDLFAGATD 240 DLHCTDLRL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-21 | 19 | 92 | 7 | 81 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00366 | DAP | Transfer from AT3G20310 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10014475m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB024036 | 1e-138 | AB024036.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MQC12. | |||
GenBank | AB032201 | 1e-138 | AB032201.1 Arabidopsis thaliana mRNA for ERF transcription factor 7, complete cds. | |||
GenBank | AK228460 | 1e-138 | AK228460.1 Arabidopsis thaliana mRNA for putative ethylene responsive element binding factor, complete cds, clone: RAFL15-05-J12. | |||
GenBank | AY037254 | 1e-138 | AY037254.1 Arabidopsis thaliana AT3g20310/MQC12_6 mRNA, complete cds. | |||
GenBank | AY085023 | 1e-138 | AY085023.1 Arabidopsis thaliana clone 124720 mRNA, complete sequence. | |||
GenBank | AY094001 | 1e-138 | AY094001.1 Arabidopsis thaliana AT3g20310/MQC12_6 mRNA, complete cds. | |||
GenBank | CP002686 | 1e-138 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006298403.1 | 0.0 | ethylene-responsive transcription factor 7 | ||||
Swissprot | Q9LDE4 | 1e-124 | ERF83_ARATH; Ethylene-responsive transcription factor 7 | ||||
TrEMBL | R0G751 | 0.0 | R0G751_9BRAS; Uncharacterized protein | ||||
STRING | XP_006298403.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20310.1 | 1e-89 | ethylene response factor 7 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10014475m |
Entrez Gene | 17891444 |
Publications ? help Back to Top | |||
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