PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10014396m | ||||||||
Common Name | CARUB_v10014142mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | LBD | ||||||||
Protein Properties | Length: 268aa MW: 30395 Da PI: 6.2231 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129 | 2.1e-40 | 35 | 134 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 aCaaCk++rrkCa+dC lapyfp++++++f n+hklFG+sn++k++k+l + e+++am++++++++ara+dPv G++g+i+klq q+e +++el Carubv10014396m 35 ACAACKYQRRKCAPDCLLAPYFPHDRHRQFLNAHKLFGVSNITKIIKSLTPPEKDAAMHTIMFQSDARANDPVDGCYGIIRKLQYQIEYTRNEL 128 7********************************************************************************************* PP DUF260 95 allkee 100 + + ++ Carubv10014396m 129 EIVLQQ 134 998776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.454 | 34 | 135 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.5E-37 | 35 | 131 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MPSGKPSSAF PLHPKPTPLK PSSSTSNTNN NTNQACAACK YQRRKCAPDC LLAPYFPHDR 60 HRQFLNAHKL FGVSNITKII KSLTPPEKDA AMHTIMFQSD ARANDPVDGC YGIIRKLQYQ 120 IEYTRNELEI VLQQLAMFRD RAHHHHQEPQ IQIQEPEDLS SFSGSCDLNN NSSIPYNYPL 180 NHVQEPSQQQ QYCSSGNNFS GLQEDMWCLQ LQDSSTTLNM KAGFIDECED IKPVEEVSSE 240 RHEFEPHEAF LEQRKLDLPS SQFIISS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-27 | 28 | 138 | 4 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-27 | 28 | 138 | 4 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10014396m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC237328 | 0.0 | AC237328.1 Arabidopsis lyrata clone JGIFAFI-41L7, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006298101.1 | 0.0 | LOB domain-containing protein 22 | ||||
Refseq | XP_023642605.1 | 0.0 | LOB domain-containing protein 22 | ||||
Swissprot | Q9LRW1 | 1e-178 | LBD22_ARATH; LOB domain-containing protein 22 | ||||
TrEMBL | R0HMS1 | 0.0 | R0HMS1_9BRAS; Uncharacterized protein | ||||
STRING | XP_006298101.1 | 0.0 | (Capsella rubella) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 1e-160 | LOB domain-containing protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10014396m |
Entrez Gene | 17892540 |
Publications ? help Back to Top | |||
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