PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10014365m
Common NameCARUB_v10014365mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GATA
Protein Properties Length: 275aa    MW: 30074.5 Da    PI: 7.7715
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10014365mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.35.6e-20198232135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C++Cg+ kTp+WR gp+g+ktLCnaCG++y++ +l
  Carubv10014365m 198 CQHCGAEKTPQWRAGPSGPKTLCNACGVRYKSGRL 232
                      *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.6E-17192242IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-15195255No hitNo description
PROSITE profilePS5011412.281195228IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.0E-15196230IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.12E-15197244No hitNo description
PfamPF003201.8E-17198232IPR000679Zinc finger, GATA-type
PROSITE patternPS003440198223IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MEMESFMDDL LNFSVPEEEE EEEDDMQPPR NLTRRKTGLR QTDSSFGLFN SDDSGVVEEE  60
DLEWISNKDA FPVIETFVGV LPPEHFRVTS PERVATEIKQ LSPVSVLETS SHNSSTTTST  120
TTTTSNSSGG STAVTTTTAA TLMSCCVSFK APAKARSKRR RTGRRDLRVL WTGNEQGGGG  180
GGIQKKKTTA AVIMGRKCQH CGAEKTPQWR AGPSGPKTLC NACGVRYKSG RLVPEYRPAN  240
SPTFTAELHS NSHRKIVEMR KQYQSGDGDR KDCG*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10014365m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2274931e-118AK227493.1 Arabidopsis thaliana mRNA for GATA transcription factor 1, complete cds, clone: RAFL14-11-O16.
GenBankAP0012971e-118AP001297.1 Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone:F14O13.
GenBankBT0244971e-118BT024497.1 Arabidopsis thaliana At3g24050 mRNA, complete cds.
GenBankCP0026861e-118CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
GenBankY136481e-118Y13648.1 Arabidopsis thaliana mRNA for GATA transcription factor 1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006298301.10.0GATA transcription factor 1 isoform X1
SwissprotQ8LAU91e-133GATA1_ARATH; GATA transcription factor 1
TrEMBLR0HN960.0R0HN96_9BRAS; Uncharacterized protein
STRINGXP_006298301.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM129872430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.11e-123GATA transcription factor 1