PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10014270m
Common NameCARUB_v10014270mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 302aa    MW: 34753.8 Da    PI: 8.2004
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10014270mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM155.32.7e-48241522128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                       pGfrFhPtdeelv +yL kkv  kk  +++e+++++diyk++PwdLp + ++ eke yfF+kr +ky+++ r+nr+t sg+Wkatg dk+v+s
  Carubv10014270m  24 LPGFRFHPTDEELVGYYLSKKVLLKKpSKIDEIVSQIDIYKFDPWDLP-RSSNMEKENYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPVYS 116
                      59*******************887764788888***************.45566899************************************* PP

              NAM  95 k..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +++++glkktLv+y g+a kg+ktdW+mhe+rl
  Carubv10014270m 117 DgpSKTVIGLKKTLVYYLGSAGKGTKTDWMMHEFRL 152
                      9878888***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-4922187IPR003441NAC domain
PROSITE profilePS5100551.32123187IPR003441NAC domain
PfamPF023656.8E-2525152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MEKMMGLRDN IRVSDEDEKE VVKLPGFRFH PTDEELVGYY LSKKVLLKKP SKIDEIVSQI  60
DIYKFDPWDL PRSSNMEKEN YFFCKRGRKY RNSIRPNRVT GSGFWKATGI DKPVYSDGPS  120
KTVIGLKKTL VYYLGSAGKG TKTDWMMHEF RLPTANDTIP GGPTHSNPTP TSSLQAEVWT  180
LCRIFKRNVS SHKYTSDWRE LANGKRVKQQ QSNYKEAYIS FGDNESSSST NVTKGISYER  240
SFFQLHQTHQ QQDQPIPMDT TQVDSLHDFS TDNNTNHHET YDDWDELRSV VEFAFPPSSF  300
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-442519319171NO APICAL MERISTEM PROTEIN
1ut4_B1e-442519319171NO APICAL MERISTEM PROTEIN
1ut7_A1e-442519319171NO APICAL MERISTEM PROTEIN
1ut7_B1e-442519319171NO APICAL MERISTEM PROTEIN
3swm_A1e-442519322174NAC domain-containing protein 19
3swm_B1e-442519322174NAC domain-containing protein 19
3swm_C1e-442519322174NAC domain-containing protein 19
3swm_D1e-442519322174NAC domain-containing protein 19
3swp_A1e-442519322174NAC domain-containing protein 19
3swp_B1e-442519322174NAC domain-containing protein 19
3swp_C1e-442519322174NAC domain-containing protein 19
3swp_D1e-442519322174NAC domain-containing protein 19
3ulx_A1e-44101872168Stress-induced transcription factor NAC1
4dul_A1e-442519319171NAC domain-containing protein 19
4dul_B1e-442519319171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00353DAPTransfer from AT3G12910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10014270m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0266451e-110AB026645.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGH6.
GenBankCP0026861e-110CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006296721.10.0transcription factor JUNGBRUNNEN 1
SwissprotQ9SK553e-73NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLR0HIW50.0R0HIW5_9BRAS; Uncharacterized protein
STRINGXP_006296720.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12910.11e-159NAC family protein
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]