PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10014270m | ||||||||
Common Name | CARUB_v10014270mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | NAC | ||||||||
Protein Properties | Length: 302aa MW: 34753.8 Da PI: 8.2004 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 155.3 | 2.7e-48 | 24 | 152 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 pGfrFhPtdeelv +yL kkv kk +++e+++++diyk++PwdLp + ++ eke yfF+kr +ky+++ r+nr+t sg+Wkatg dk+v+s Carubv10014270m 24 LPGFRFHPTDEELVGYYLSKKVLLKKpSKIDEIVSQIDIYKFDPWDLP-RSSNMEKENYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPVYS 116 59*******************887764788888***************.45566899************************************* PP NAM 95 k..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++glkktLv+y g+a kg+ktdW+mhe+rl Carubv10014270m 117 DgpSKTVIGLKKTLVYYLGSAGKGTKTDWMMHEFRL 152 9878888***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-49 | 22 | 187 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.321 | 23 | 187 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.8E-25 | 25 | 152 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MEKMMGLRDN IRVSDEDEKE VVKLPGFRFH PTDEELVGYY LSKKVLLKKP SKIDEIVSQI 60 DIYKFDPWDL PRSSNMEKEN YFFCKRGRKY RNSIRPNRVT GSGFWKATGI DKPVYSDGPS 120 KTVIGLKKTL VYYLGSAGKG TKTDWMMHEF RLPTANDTIP GGPTHSNPTP TSSLQAEVWT 180 LCRIFKRNVS SHKYTSDWRE LANGKRVKQQ QSNYKEAYIS FGDNESSSST NVTKGISYER 240 SFFQLHQTHQ QQDQPIPMDT TQVDSLHDFS TDNNTNHHET YDDWDELRSV VEFAFPPSSF 300 S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-44 | 25 | 193 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-44 | 25 | 193 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-44 | 25 | 193 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-44 | 25 | 193 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-44 | 25 | 193 | 22 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-44 | 25 | 193 | 22 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-44 | 25 | 193 | 22 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-44 | 25 | 193 | 22 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-44 | 25 | 193 | 22 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-44 | 25 | 193 | 22 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-44 | 25 | 193 | 22 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-44 | 25 | 193 | 22 | 174 | NAC domain-containing protein 19 |
3ulx_A | 1e-44 | 10 | 187 | 2 | 168 | Stress-induced transcription factor NAC1 |
4dul_A | 1e-44 | 25 | 193 | 19 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-44 | 25 | 193 | 19 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00353 | DAP | Transfer from AT3G12910 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10014270m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB026645 | 1e-110 | AB026645.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGH6. | |||
GenBank | CP002686 | 1e-110 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006296721.1 | 0.0 | transcription factor JUNGBRUNNEN 1 | ||||
Swissprot | Q9SK55 | 3e-73 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | R0HIW5 | 0.0 | R0HIW5_9BRAS; Uncharacterized protein | ||||
STRING | XP_006296720.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM306 | 28 | 200 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12910.1 | 1e-159 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10014270m |
Entrez Gene | 17891245 |