PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10014214m
Common NameCARUB_v10014214mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HD-ZIP
Protein Properties Length: 318aa    MW: 36566.8 Da    PI: 5.4034
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10014214mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.32.3e-17119171456
                      -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      + +++ eq+++Le+ Fe  +++  e++ +LAk lg++ rq+ +WFqNrRa++k
  Carubv10014214m 119 KKRLQLEQVKALEKSFELGNKLEPERKIQLAKALGMQPRQIAIWFQNRRARWK 171
                      4457889*********************************************9 PP
2HD-ZIP_I/II122.81.6e-39117208192
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      ekk+rl+ eqvk+LE+sFe  +kLeperK +la++Lg+qprq+a+WFqnrRAR+kt+qlE+dy++Lk+++++lk++n++L + +++L +e++
  Carubv10014214m 117 EKKKRLQLEQVKALEKSFELGNKLEPERKIQLAKALGMQPRQIAIWFQNRRARWKTRQLERDYDSLKKQFESLKSDNDSLLAYNKKLLAEVM 208
                      69*************************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.115113173IPR001356Homeobox domain
SuperFamilySSF466893.21E-18115175IPR009057Homeodomain-like
SMARTSM003894.6E-16116177IPR001356Homeobox domain
CDDcd000863.86E-15118174No hitNo description
PfamPF000461.4E-14119171IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.0E-18121181IPR009057Homeodomain-like
PRINTSPR000313.7E-5144153IPR000047Helix-turn-helix motif
PROSITE patternPS000270148171IPR017970Homeobox, conserved site
PRINTSPR000313.7E-5153169IPR000047Helix-turn-helix motif
PfamPF021835.8E-14174213IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MGLYGSQMLW AGLQKLRPIW VEEEAVDLWS SFENIIKYAD AGLSLEMAFP QHGFMFQQLH  60
EDTSQDQLPS CPPHLFNGGG NYMMNRSMSL MNVQEDHNQT LDEENLSDDG AHTMLGEKKK  120
RLQLEQVKAL EKSFELGNKL EPERKIQLAK ALGMQPRQIA IWFQNRRARW KTRQLERDYD  180
SLKKQFESLK SDNDSLLAYN KKLLAEVMAL KNKECNEGNI IKREAEASWS NNGSTENSSD  240
INLELPRETT TTHVNTIKDL FPSSIRSSAH RDDDQNHEIV QEESLCNMFN GIDETTSSAG  300
YWAWSDPNHN HHHHQFN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00322DAPTransfer from AT3G01220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10014214m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:12644682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2288900.0AK228890.1 Arabidopsis thaliana mRNA for putative homeobox-leucine zipper protein, complete cds, clone: RAFL16-20-K05.
GenBankAY0876310.0AY087631.1 Arabidopsis thaliana clone 3722 mRNA, complete sequence.
GenBankBT0292210.0BT029221.1 Arabidopsis thaliana At3g01220 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023642332.10.0homeobox-leucine zipper protein ATHB-20
SwissprotQ8LAT00.0ATB20_ARATH; Homeobox-leucine zipper protein ATHB-20
TrEMBLR0G6M40.0R0G6M4_9BRAS; Uncharacterized protein
STRINGXP_006298163.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30952666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01220.10.0homeobox protein 20