PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10014213m
Common NameCARUB_v10013932mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family G2-like
Protein Properties Length: 319aa    MW: 35911.1 Da    PI: 5.8982
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10014213mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like33.49.8e-111233355
          G2-like 33 lelmkvkgLtlehvkSHLQkYRl 55
                     +++m+++gLtl+h+kSHLQkYRl
  Carubv10014213m  1 MKVMGIPGLTLYHLKSHLQKYRL 23
                     79********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-9124IPR009057Homeodomain-like
PfamPF143795.9E-1670110IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MKVMGIPGLT LYHLKSHLQK YRLSKNLNGQ ANSGLNKIGM MTMMEEKTPD VDEIQSENLS  60
IGPQLNKNSP INEALQMQIE VQRRLHEQLE LRIEAQGKYL QSVLEKAQET LGRQNLGAAG  120
IEAAKVQLSE LVSKVSAEYP NSSFLEPKEV QNLCPQQGQT AYPPDCSLES CLTSSEGTQK  180
NPKMLENNRL GLRTYLGDST SEQKENMEEP LFQRMELTWT EGLRGNPYLS TMVSETEQRV  240
SYSERSPGRL SIGVGLQGHK GHQQGNNEYT DKSEDHKFET RNHRKGTDST TELDLNTHVE  300
NYSSTRTKQF DLNGFSWN*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00331DAPTransfer from AT3G04030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10014213m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0745630.0AY074563.1 Arabidopsis thaliana AT3g04030/T11I18_14 mRNA, complete cds.
GenBankAY1439150.0AY143915.1 Arabidopsis thaliana At3g04030/T11I18_14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023642561.10.0myb-related protein 2 isoform X3
SwissprotQ9SQQ90.0PHL9_ARATH; Myb-related protein 2
TrEMBLR0I3460.0R0I346_9BRAS; Uncharacterized protein
STRINGXP_006297889.10.0(Capsella rubella)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.10.0G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]