PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10014213m | ||||||||
Common Name | CARUB_v10013932mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | G2-like | ||||||||
Protein Properties | Length: 319aa MW: 35911.1 Da PI: 5.8982 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 33.4 | 9.8e-11 | 1 | 23 | 33 | 55 |
G2-like 33 lelmkvkgLtlehvkSHLQkYRl 55 +++m+++gLtl+h+kSHLQkYRl Carubv10014213m 1 MKVMGIPGLTLYHLKSHLQKYRL 23 79********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-9 | 1 | 24 | IPR009057 | Homeodomain-like |
Pfam | PF14379 | 5.9E-16 | 70 | 110 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MKVMGIPGLT LYHLKSHLQK YRLSKNLNGQ ANSGLNKIGM MTMMEEKTPD VDEIQSENLS 60 IGPQLNKNSP INEALQMQIE VQRRLHEQLE LRIEAQGKYL QSVLEKAQET LGRQNLGAAG 120 IEAAKVQLSE LVSKVSAEYP NSSFLEPKEV QNLCPQQGQT AYPPDCSLES CLTSSEGTQK 180 NPKMLENNRL GLRTYLGDST SEQKENMEEP LFQRMELTWT EGLRGNPYLS TMVSETEQRV 240 SYSERSPGRL SIGVGLQGHK GHQQGNNEYT DKSEDHKFET RNHRKGTDST TELDLNTHVE 300 NYSSTRTKQF DLNGFSWN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00331 | DAP | Transfer from AT3G04030 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10014213m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY074563 | 0.0 | AY074563.1 Arabidopsis thaliana AT3g04030/T11I18_14 mRNA, complete cds. | |||
GenBank | AY143915 | 0.0 | AY143915.1 Arabidopsis thaliana At3g04030/T11I18_14 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023642561.1 | 0.0 | myb-related protein 2 isoform X3 | ||||
Swissprot | Q9SQQ9 | 0.0 | PHL9_ARATH; Myb-related protein 2 | ||||
TrEMBL | R0I346 | 0.0 | R0I346_9BRAS; Uncharacterized protein | ||||
STRING | XP_006297889.1 | 0.0 | (Capsella rubella) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04030.1 | 0.0 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10014213m |
Entrez Gene | 17893471 |
Publications ? help Back to Top | |||
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