PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10014200m

Common Name

CARUB_v10014200mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bHLH

Protein Properties

Length: 322aa MW: 35767 Da PI: 5.0288

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10014200m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.3	3.7e-10	168	215	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RR+++N++f L ++l + + +K +K iL A++ +++L Carubv10014200m 168 TKACREKLRREKLNDRFMDLSSVLEPG---RTPKTDKLVILDDAIRVVNQL 215 6789********************8...8**************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.89E-13	156	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.73E-9	162	216	No hit	No description
PROSITE profile	PS50888	13.052	164	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.2E-7	168	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-11	170	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.7E-10	170	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MYPSIHDDDD LLAAFCFDQS NGVEDPYGYI QTNEENNIFQ GFGSSGVNLQ PQQHEQFDSF 60 TQQVCSFRGE NDVVVYSSSI GSSQFDLAAS FSGVLQQETH KVCGFGGQND CSAVPHLQQQ 120 ETGQVVCGGV VEINSSSSVG AVKEELEHVE EECSRKRRRT GSCSKPGTKA CREKLRREKL 180 NDRFMDLSSV LEPGRTPKTD KLVILDDAIR VVNQLRGEAN ELKETNQKLL EEIKSLKAEK 240 NELREEKLVL KADKEKMEQQ LKSMTVPSSG FMPSQHPAAF HPNKMAVFPS YGYYPNMSMW 300 PFVNPAGRDS SQDVKNLPPV A*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	154	158	RKRRR
2	154	159	RKRRRT

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00372	DAP	Transfer from AT3G23210	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10014200m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY099674	0.0	AY099674.1 Arabidopsis thaliana unknown protein (At3g23210) mRNA, complete cds.
GenBank	AY128853	0.0	AY128853.1 Arabidopsis thaliana unknown protein (At3g23210) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006298151.1	0.0	transcription factor bHLH34
Swissprot	Q9LTC7	0.0	BH034_ARATH; Transcription factor bHLH34
TrEMBL	R0HMW7	0.0	R0HMW7_9BRAS; Uncharacterized protein
STRING	XP_006298151.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4026	26	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23210.1	1e-169	bHLH family protein

Link Out ? help Back to Top
Phytozome	Carubv10014200m
Entrez Gene	17890628

Publications ? help Back to Top
Li X,Zhang H,Ai Q,Liang G,Yu D Two bHLH Transcription Factors, bHLH34 and bHLH104, Regulate Iron Homeostasis in Arabidopsis thaliana. Plant Physiol., 2016. 170(4): p. 2478-93 [PMID:26921305] Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]