PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10014195m | ||||||||
Common Name | CARUB_v10014195mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MYB | ||||||||
Protein Properties | Length: 323aa MW: 36984.7 Da PI: 4.7413 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.2 | 7.1e-17 | 21 | 68 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd +l ++++ G g+W++ +r+ g+ Rt+k+c++rw++yl Carubv10014195m 21 RGPWTAEEDFKLMNYIATNGEGRWNSLSRCAGLQRTGKSCRLRWLNYL 68 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.5 | 4.8e-16 | 74 | 117 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ Carubv10014195m 74 RGNITLEEQLLILELHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 117 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.742 | 16 | 68 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.2E-30 | 18 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.1E-13 | 20 | 70 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.4E-15 | 21 | 68 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-22 | 22 | 75 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.60E-10 | 23 | 68 | No hit | No description |
PROSITE profile | PS51294 | 22.917 | 69 | 123 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-14 | 73 | 121 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.0E-15 | 74 | 117 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-22 | 76 | 122 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.63E-7 | 94 | 117 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009620 | Biological Process | response to fungus | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MEDKGRSLKN NNMEDEMDLK RGPWTAEEDF KLMNYIATNG EGRWNSLSRC AGLQRTGKSC 60 RLRWLNYLRP DVRRGNITLE EQLLILELHS RWGNRWSKIA QYLPGRTDNE IKNYWRTRVQ 120 KHAKQLKCDV NSQQFKDTMK YLWMPRLVER IQSASATASA ATTTTGSAGT SSCITTSNNH 180 QFMNYDYNNN NNSMGQQFGV MSNNDYITPE NSSVAVSPVS DLTEYYSAPN PNPNPEYYSG 240 QMGNSYYPDQ NMVGPQLLPE NYFDYSGLLD EDLTAMQEQS NLNWFENING AASSSDSLWN 300 IGESDEDFWF LQQQQLNNNG SF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-24 | 18 | 115 | 24 | 120 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor contributing to the regulation of stamen maturation and male fertility in response to jasmonate signaling. Required for correct timing of anther dehiscence. Acts as a negative regulator of abscisic acid-induced cell death. Not involved in the regulation of BOI. Regulated by MYB21 and at a lower level by MYB24. Negatively regulated by the proteasome in an SCF(COI1) E3 ubiquitin-protein ligase complex-dependent manner. {ECO:0000269|PubMed:14555693, ECO:0000269|PubMed:19091873, ECO:0000269|PubMed:20921156, ECO:0000269|PubMed:23952703}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00334 | DAP | Transfer from AT3G06490 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10014195m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by jasmonate and pathogen infection. {ECO:0000269|PubMed:14555693, ECO:0000269|PubMed:19091873}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF262733 | 0.0 | AF262733.2 Arabidopsis thaliana putative transcription factor MYB108 (MYB108) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006298146.1 | 0.0 | transcription factor MYB108 | ||||
Swissprot | Q9LDE1 | 0.0 | MY108_ARATH; Transcription factor MYB108 | ||||
TrEMBL | R0HMW4 | 0.0 | R0HMW4_9BRAS; Uncharacterized protein | ||||
STRING | XP_006298146.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06490.1 | 1e-179 | myb domain protein 108 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10014195m |
Entrez Gene | 17891261 |
Publications ? help Back to Top | |||
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