PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10014129m | ||||||||
Common Name | CARUB_v10014129mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | ERF | ||||||||
Protein Properties | Length: 337aa MW: 37835.1 Da PI: 6.5205 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.3 | 1.1e-19 | 189 | 239 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++ + kl+ge Carubv10014129m 189 LYRGVRQRH-WGKWVAEIRMPRN---RTRLWLGTFDTAEEAAMAYDREAFKLRGE 239 59******9.**********955...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 9.72E-34 | 188 | 248 | No hit | No description |
PROSITE profile | PS51032 | 23.051 | 189 | 246 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.42E-23 | 189 | 247 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.0E-32 | 189 | 247 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.7E-41 | 189 | 252 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-11 | 190 | 201 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-13 | 190 | 239 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-11 | 212 | 228 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:2000070 | Biological Process | regulation of response to water deprivation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MATAKNKGKS IRTLGTNEAE NMDVIELEEE LQFISSGKNK DSSSGSDMWF GDASSTSQRS 60 LRKTRTFDRH NPYLLSSYAT PHPPPTTTSC SVSSSSRVTF PFSIAPTIQN QQPFSYPNDL 120 SGHRQQQMIS FGPQLQVQPY LAQQQQQLLQ YWRDILKLSP SGRMMMMNML RQGGDLTRPP 180 MQPFSATKLY RGVRQRHWGK WVAEIRMPRN RTRLWLGTFD TAEEAAMAYD REAFKLRGET 240 ARLNFPELFL NKQEATPVHQ KQCETATASE EASEKGEGDS SSALAVGGVS EETGWAEAWL 300 NAIPEEWGPG SPLWDDYHFP TSNHKDDHNS SSSDTV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-20 | 188 | 246 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in abiotic stress tolerance. Can directly regulate stress-related gene expression by binding to the DNA sequence 5'-[AG]CCGAC-3' (DRE element) of their promoter region. Involved in the regulation of stomatal closure movement under drought stress (PubMed:23625358). Acts as a positive regulator of drought stress response (PubMed:22095047). {ECO:0000269|PubMed:22095047, ECO:0000269|PubMed:23625358}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10014129m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress (PubMed:18550687, PubMed:22095047, PubMed:23625358). Induced by salt stress (PubMed:22095047). Induced by abscisic acid (ABA) and heat stress (PubMed:23625358). {ECO:0000269|PubMed:18550687, ECO:0000269|PubMed:22095047, ECO:0000269|PubMed:23625358}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006298084.1 | 0.0 | ethylene-responsive transcription factor ERF053 | ||||
Swissprot | Q9SKT1 | 1e-179 | ERF53_ARATH; Ethylene-responsive transcription factor ERF053 | ||||
TrEMBL | R0G605 | 0.0 | R0G605_9BRAS; Uncharacterized protein | ||||
STRING | XP_006298084.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2141 | 27 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20880.1 | 1e-143 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10014129m |
Entrez Gene | 17890634 |
Publications ? help Back to Top | |||
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