PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10014097m
Common NameCARUB_v10014092mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HB-other
Protein Properties Length: 346aa    MW: 38342.6 Da    PI: 8.5917
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10014097mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox14.55.9e-0557743855
                     TS-HHHHHHHHHHHHHHH CS
         Homeobox 38 gLterqVkvWFqNrRake 55
                      ++ +q+ +WFqNrR+  
  Carubv10014097m 57 VVQFKQIWNWFQNRRYAL 74
                     56779**********965 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.0052781IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.3E-51879IPR009057Homeodomain-like
SuperFamilySSF466892.1E-81978IPR009057Homeodomain-like
PfamPF167191.5E-41139266IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MGRPPSNGGP AFRFILSEVT EMEAILLQHN TAMPGRHILE ALADKFSESP ERKGKIVVQF  60
KQIWNWFQNR RYALRARGNK APGKLNVSSM PRMDLPNQMR NVIQPLAAPK TTHMTGNLPG  120
MTPAPSVPGV MRSGSDNSYL EFEAKSARDG AWYDVQAFLA HRNLEIGDPE VQVRFAGFEV  180
EEDEWINVKK HVRQRSLPCE ASECVAVLAG DLVLCFQEGK DQALYFDAIV LDAQRRRHDV  240
RGCRCRFLVR YSHDQSEEIV PLRKICRRPE TDYRLQQLHS AVNDLTNLNQ HQIPALDAAA  300
KTSLSHSGTS VPIVTPEPKD RSLSATPATS VQPSSNAAAV PAGSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A7e-471402704134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B7e-471402704134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A7e-471402704134SHH1 SAWADEE
4iur_B7e-471402704134SHH1 SAWADEE
4iut_A7e-471402704134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B7e-471402704134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A7e-471402704134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B7e-471402704134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A7e-471402704134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B7e-471402704134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10014097m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0930420.0AY093042.1 Arabidopsis thaliana unknown protein (At3g18380) mRNA, complete cds.
GenBankBT0034280.0BT003428.1 Arabidopsis thaliana unknown protein (At3g18380) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006298048.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X3
SwissprotQ8RWJ70.0SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLR0HZD80.0R0HZD8_9BRAS; Uncharacterized protein
STRINGXP_006298048.10.0(Capsella rubella)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.30.0sequence-specific DNA binding transcription factors;sequence-specific DNA binding