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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Carubv10014097m |
Common Name | CARUB_v10014092mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family |
HB-other |
Protein Properties |
Length: 346aa MW: 38342.6 Da PI: 8.5917 |
Description |
HB-other family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Carubv10014097m | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 14.5 | 5.9e-05 | 57 | 74 | 38 | 55 |
TS-HHHHHHHHHHHHHHH CS
Homeobox 38 gLterqVkvWFqNrRake 55
++ +q+ +WFqNrR+
Carubv10014097m 57 VVQFKQIWNWFQNRRYAL 74
56779**********965 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 346 aa
Download sequence Send
to blast |
MGRPPSNGGP AFRFILSEVT EMEAILLQHN TAMPGRHILE ALADKFSESP ERKGKIVVQF 60 KQIWNWFQNR RYALRARGNK APGKLNVSSM PRMDLPNQMR NVIQPLAAPK TTHMTGNLPG 120 MTPAPSVPGV MRSGSDNSYL EFEAKSARDG AWYDVQAFLA HRNLEIGDPE VQVRFAGFEV 180 EEDEWINVKK HVRQRSLPCE ASECVAVLAG DLVLCFQEGK DQALYFDAIV LDAQRRRHDV 240 RGCRCRFLVR YSHDQSEEIV PLRKICRRPE TDYRLQQLHS AVNDLTNLNQ HQIPALDAAA 300 KTSLSHSGTS VPIVTPEPKD RSLSATPATS VQPSSNAAAV PAGSA*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4iuq_A | 7e-47 | 140 | 270 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuq_B | 7e-47 | 140 | 270 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iur_A | 7e-47 | 140 | 270 | 4 | 134 | SHH1 SAWADEE |
4iur_B | 7e-47 | 140 | 270 | 4 | 134 | SHH1 SAWADEE |
4iut_A | 7e-47 | 140 | 270 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iut_B | 7e-47 | 140 | 270 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_A | 7e-47 | 140 | 270 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_B | 7e-47 | 140 | 270 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_A | 7e-47 | 140 | 270 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_B | 7e-47 | 140 | 270 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AY093042 | 0.0 | AY093042.1 Arabidopsis thaliana unknown protein (At3g18380) mRNA, complete cds. |
GenBank | BT003428 | 0.0 | BT003428.1 Arabidopsis thaliana unknown protein (At3g18380) mRNA, complete cds. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT3G18380.3 | 0.0 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |