 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Carubv10014092m |
| Common Name | CARUB_v10014092mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
| Family |
HB-other |
| Protein Properties |
Length: 347aa MW: 38470.7 Da PI: 8.5917 |
| Description |
HB-other family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Carubv10014092m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 14.5 | 5.9e-05 | 57 | 74 | 38 | 55 |
TS-HHHHHHHHHHHHHHH CS
Homeobox 38 gLterqVkvWFqNrRake 55
++ +q+ +WFqNrR+
Carubv10014092m 57 VVQFKQIWNWFQNRRYAL 74
56779**********965 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 347 aa
Download sequence Send
to blast |
MGRPPSNGGP AFRFILSEVT EMEAILLQHN TAMPGRHILE ALADKFSESP ERKGKIVVQF 60
KQIWNWFQNR RYALRARGNK APGKLNVSSM PRMDLPNQMR NVIQPLAAPK TTHMTGNLPG 120
MTPAPSVPGV MRSGSDNSYL EFEAKSARDG AWYDVQAFLA HRNLEIGDPE VQVRFAGFEV 180
EEDEWINVKK HVRQRSLPCE ASECVAVLAG DLVLCFQEGK DQALYFDAIV LDAQRRRHDV 240
RGCRCRFLVR YSHDQSEQEI VPLRKICRRP ETDYRLQQLH SAVNDLTNLN QHQIPALDAA 300
AKTSLSHSGT SVPIVTPEPK DRSLSATPAT SVQPSSNAAA VPAGSA*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4iuq_A | 4e-45 | 140 | 271 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuq_B | 4e-45 | 140 | 271 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iur_A | 4e-45 | 140 | 271 | 4 | 134 | SHH1 SAWADEE |
| 4iur_B | 4e-45 | 140 | 271 | 4 | 134 | SHH1 SAWADEE |
| 4iut_A | 4e-45 | 140 | 271 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iut_B | 4e-45 | 140 | 271 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuu_A | 4e-45 | 140 | 271 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuu_B | 4e-45 | 140 | 271 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuv_A | 4e-45 | 140 | 271 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuv_B | 4e-45 | 140 | 271 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY093042 | 0.0 | AY093042.1 Arabidopsis thaliana unknown protein (At3g18380) mRNA, complete cds. |
| GenBank | BT003428 | 0.0 | BT003428.1 Arabidopsis thaliana unknown protein (At3g18380) mRNA, complete cds. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G18380.3 | 0.0 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |
