PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10014086m
Common NameCARUB_v10014086mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NF-YA
Protein Properties Length: 349aa    MW: 38392.6 Da    PI: 10.3208
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10014086mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA93.72.2e-29190249258
        CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRaklee...ekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                       ++YVN+KQy++I++RRq+Rak+++   +kkl++++rkpy+h+SRh hAlrRpRgsgGrF
  Carubv10014086m 190 GTIYVNSKQYHGIIRRRQSRAKAAAvldQKKLSTRCRKPYMHHSRHLHALRRPRGSGGRF 249
                      689*********************9999*******************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005217.9E-31187252IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.158188252IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.8E-21191213IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.5E-23191249IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.8E-21226249IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MNLCFLFWNR YGFLTIGLFS LPLPRNLKFS LYSLYTLYSI TPSVNKSLGN IIWKMAMQTV  60
REGLFSAPQT SWWNAFGSQP LAQQSLAGDS DSFAGVKAGS AGETVQGVVK QSNSATHLAF  120
SLGDVKSSRV VSKSHGAVFS MQSPSLELGF THPPIYAKYP YGEQQYYGVV SAYGSQSRVM  180
LPLNMETEDG TIYVNSKQYH GIIRRRQSRA KAAAVLDQKK LSTRCRKPYM HHSRHLHALR  240
RPRGSGGRFL NTKSQNLDKS GNNGKKADGN KQQIQSEPKP QQSNSQNSEV VHPESGIINL  300
SNGLLNVTGS EVTSMNYFLS SPVHSLGGMV MPSKWIAAMD NSCCNFKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A6e-16189250260HAPB protein
4g92_A6e-16189250260HAPB protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10014086m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2280890.0AK228089.1 Arabidopsis thaliana mRNA for putative transcription factor, complete cds, clone: RAFL14-57-G15.
GenBankBT0260620.0BT026062.1 Arabidopsis thaliana At3g05690 mRNA, complete cds.
GenBankY137210.0Y13721.1 Arabidopsis thaliana mRNA for Hap2b transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006298041.10.0nuclear transcription factor Y subunit A-2 isoform X2
SwissprotQ9M9X40.0NFYA2_ARATH; Nuclear transcription factor Y subunit A-2
TrEMBLR0HMJ60.0R0HMJ6_9BRAS; Uncharacterized protein
STRINGXP_006298041.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30082767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05690.10.0nuclear factor Y, subunit A2
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  2. Nasim Z,Fahim M,Ahn JH
    Possible Role of MADS AFFECTING FLOWERING 3 and B-BOX DOMAIN PROTEIN 19 in Flowering Time Regulation of Arabidopsis Mutants with Defects in Nonsense-Mediated mRNA Decay.
    Front Plant Sci, 2017. 8: p. 191
    [PMID:28261246]
  3. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]