PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10013932m | ||||||||
Common Name | CARUB_v10013932mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | G2-like | ||||||||
Protein Properties | Length: 384aa MW: 43180.3 Da PI: 6.6557 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107.5 | 7.5e-34 | 28 | 82 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerF+eav+qLGG++kAtPkti+++m+++gLtl+h+kSHLQkYRl Carubv10013932m 28 KPRLKWTPDLHERFIEAVNQLGGADKATPKTIMKVMGIPGLTLYHLKSHLQKYRL 82 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.227 | 25 | 85 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-31 | 26 | 83 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.48E-17 | 27 | 83 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.1E-23 | 28 | 83 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.4E-10 | 30 | 81 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 4.1E-26 | 129 | 175 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MHISSERNHF LRGNSPGDSG LILSTDAKPR LKWTPDLHER FIEAVNQLGG ADKATPKTIM 60 KVMGIPGLTL YHLKSHLQKY RLSKNLNGQA NSGLNKIGMM TMMEEKTPDV DEIQSENLSI 120 GPQLNKNSPI NEALQMQIEV QRRLHEQLEV QRHLQLRIEA QGKYLQSVLE KAQETLGRQN 180 LGAAGIEAAK VQLSELVSKV SAEYPNSSFL EPKEVQNLCP QQGQTAYPPD CSLESCLTSS 240 EGTQKNPKML ENNRLGLRTY LGDSTSEQKE NMEEPLFQRM ELTWTEGLRG NPYLSTMVSE 300 TEQRVSYSER SPGRLSIGVG LQGHKGHQQG NNEYTDKSED HKFETRNHRK GTDSTTELDL 360 NTHVENYSST RTKQFDLNGF SWN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-20 | 27 | 84 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-20 | 27 | 84 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 2e-20 | 28 | 84 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-20 | 28 | 84 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-20 | 28 | 84 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-20 | 28 | 84 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-20 | 27 | 84 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-20 | 27 | 84 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-20 | 27 | 84 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-20 | 27 | 84 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-20 | 27 | 84 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-20 | 27 | 84 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00331 | DAP | Transfer from AT3G04030 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10013932m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ222089 | 0.0 | HQ222089.1 Arabidopsis thaliana myb family transcription factor (MYR2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023642559.1 | 0.0 | myb-related protein 2 isoform X1 | ||||
Swissprot | Q9SQQ9 | 0.0 | PHL9_ARATH; Myb-related protein 2 | ||||
TrEMBL | R0G5G2 | 0.0 | R0G5G2_9BRAS; Uncharacterized protein | ||||
STRING | XP_006297889.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3336 | 27 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04030.3 | 0.0 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10013932m |
Entrez Gene | 17893471 |
Publications ? help Back to Top | |||
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